Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1000 ATGGATCATGTGGTTGGTGACAAGTTTAAACTTGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTCTATTTAGGTGTTAATATTCAAACTGGAGAGGAGGTTGCTGTGAAACTGGAATCTGTGAAGACCAGGCATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGTCATCGACCTTCTTGGGCCAAGTCTTGAAGATTTGTTCAACTATTGCAACCGAAAGTTCACATTGAAGACAGTTTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCAAGAAGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGGAAAGCAAATCAGGTGTATGCCATTGACTATGGCCTCGGAAAGAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAATCTTACAGGCACAGCACGCTATGCAAGTGTCAACACTCATCTTGGAATTGAGCAAAGCAGAAGGGATGATCTGGAATCTCTTGGATATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCATGGCAGGGTCTCAGGGCTGGCAACAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAGTCTCAACTTCCATAGAGGTGCTCTGTAAATCATATCCCTCCGAGTTTGTATCATACTTCCATTATTGCCGATCATTGCGGTTTGAGGACAAGCCAGATTACTCATATTTGAAGAGACTTTTCCGAGACCTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTCGACTGGACTATATTGAAGTATCCACAGAGTAATGGAAGCTCTAGAGGGAGGCATGGCACTGGCAAGGCAGTTATGGATGTCGGTCAACCTATACAAAAACCGGAAAGGAACTCAGGTGGGAGAGAGATTCGAGAGAAATTCTCTGGTGCTGTTGAAACTTACTCCCGAAGGAACCCTGCTGGTGCTACTCCTCATGTTGAAACTTACTCCCGGAGGAACCCTGCAGGTGCTACTCCCCATGTTGAAACTTACTCTCGGAGGAACCCTGCAGGTGCTACTCCACTTGTTGAAACTTACTCCCGGAGGAACCCTGCAGGTGCTACTCCTCATGTTGAAACTTACTCCCGGAGGAACCCTGCAGGTGCTACTCCTCTTGTTGAAACTTACTCCCGGAGGAACACTGGAGGAGCTACTCCTTTTGTTGAAACTTACTCCCGAAGGAACCCTGCAGCTGCTACTCCTCTTGTTGATCGCGCCAAATATAGGACGTCTGAGGATATTGCAGTACACAACGATTTGCACCATGCACAACACGGTCAAGCTCGATATGGCAGCAGTTCAAGAAGAGCCTTAATCTCATCAAACAAGCAAATTTCTTCAGGTGACCATACTGGCAGGCTGACCTCAAGTGGTGGCCGACAAACAGCCACACATAGAATGCATGACACCAGACAACCAACTTTCACGCGCAGTGGATCTATTAGAGGCGACCGCGATGATCCTTTGCGGAGCTTTGAGCTCCTTAATATCAGGAAGTAG 1623 0.451 MDHVVGDKFKLGRKIGSGSFGELYLGVNIQTGEEVAVKLESVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLINRVEYMHSRSFLHRDIKPDNFLMGLGRKANQVYAIDYGLGKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISEKKVSTSIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQSNGSSRGRHGTGKAVMDVGQPIQKPERNSGGREIREKFSGAVETYSRRNPAGATPHVETYSRRNPAGATPHVETYSRRNPAGATPLVETYSRRNPAGATPHVETYSRRNPAGATPLVETYSRRNTGGATPFVETYSRRNPAAATPLVDRAKYRTSEDIAVHNDLHHAQHGQARYGSSSRRALISSNKQISSGDHTGRLTSSGGRQTATHRMHDTRQPTFTRSGSIRGDRDDPLRSFELLNIRK* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1000 540 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan20g1000 540 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lan20g1000 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan20g1000 540 MobiDBLite consensus disorder prediction 483 528 - -
Lan20g1000 540 Gene3D Transferase(Phosphotransferase) domain 1 1 327 - -
Lan20g1000 540 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 317 - -
Lan20g1000 540 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1000 540 PANTHER CASEIN KINASE-RELATED 1 317 - -
Lan20g1000 540 MobiDBLite consensus disorder prediction 344 376 - -
Lan20g1000 540 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1000 540 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1000 540 CDD STKc_CK1_delta_epsilon 8 282 - -
Lan20g1000 540 MobiDBLite consensus disorder prediction 483 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1000 Lan-Chr20 10732484 10739472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1000 8 213 MAP Kinase Kinase Kinase AT1G54960 26.147 5.03e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan20g1000 Pkinase 7.8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1000 K08960 - gmx:100789031 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0485 9 7241635 7247884 Lan20g1000 20 10732484 10739472 PCT
Lan5g1239 5 26194764 26200876 Lan20g1000 20 10732484 10739472 PCT
Lan20g1000 20 10732484 10739472 Lan9g0485 9 7241635 7247884 PCT
Lan20g1000 20 10732484 10739472 Lan5g1239 5 26194764 26200876 PCT