Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0997 ATGGAGGAAGAACAGGATCGAATTTTGCTCAACACTTTGGGCGTCAAATCTGCGAATCCTGAAGACATTGAACGTCACATCATACAAAAGGCAAGGAATGATGTGGTGACAGACACTGCGGAAGGAAGCACCAAGGAAGAAAATCACCATGTGTCTGAAAATGTTGATCCTTCATCTTCTACCAAAGCAGAAGAACTTCAGCAGAAATTAAGGGCATTAGAGTTCGAAATTGGCGCAGTTGCTTCCACGATTGAAGACGTTGAAAATAATGGAGATTATAGTGGTGTTGGTGAGGACGAACAGGAGCAAGGGATTGCAACAGGGGATGATTCCTCCAATGGTTCGGATCTTCAGCATGTTCTTGCTGCAGAAAGGCTAAGAAGCCTGAAGAACACGAAGGCTCAACTAGAGAAAGAGCTTAAAAAGTTGGGTAAAGATAACAACTCCAAGAGTACTGAACGTGAAAAAGTGATATTTGATTTGGTAAAGGAAGAGAGAACATCAAAGAGGAAACTTAAGGAAAAGGATAAGAAATTACAGAAAAGCTCTGGAAAGAAGCTTAAGAAGGTCTCATTTAATGACGATGTTGACTTTGATGCTGTTTTGGATGCAGCTTCTGCAGGTCTTGTTGAAACAGAAAGGGATGAATTGGTCAGAAAAGGAATTTTAACCCCTTTTCATAAGTTGAAAGGCTTCGAGCGTCGCTTTCAACAACCTGAAACATCAAGTAGTCATAATGCTGCTGAGGATGAAAGTGCCATGGATCTTGTTTCTGACAGTGTTGAAAGAACTGCCAGATCAATATCTGAGGCAGCGAGAGCTCGCCGAACCACCAAGCTGCTCAATTCTGAAGATGTACCAAAGCTTGAGGCACCTACTATTCCTTTTCAGAGGCTCAGGAAACCACTAAGAGTTAAAGATTCAAATAAGAAAAAGAGGCGGCCCTTGCCTGGTAGGAAATGGACCAAGCGTGTTTCAAGCGAGGATACATGTCTGGAAGAACATGAAAATGCAAATGATGGCTTGGACACTTCCAGTTGTGAAAATTTAGAGGCACAAGATGTTGAACTTGCTGATCATGATTCTTCTTATATAATATTAGAAGGTGGGCTGAAAATCCCTGATAAAATATTTGAAGCTCTATTTGACTATCAAAAGGTTGGAGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGTAAAACTGTCCAGGTCTTGTCTTTTCTTGGTGCTTTGCATTTCAGTGGCATGTACAAACCCAGTATTATTGTGTGTCCTGTTACACTCTTGAGACAGTGGAAAAGGGAAGCTAATAAGTGGTACCCAAAATTCCATGTAGAGCTTTTGCATGACTCTGCTCAGGATTCTGCTCCTAGAAAGAAGCAAGCTAAATCTGATGAAACAAAAGATGAAAGTGATAGTTCAAATGACAATGATTATGAGAGAACTTCACCAACTAAAAGCAAAAGAAAATGGGAATCCCTGATAAATCGTGTCGTGGGATCAGAATTCGGATTACTTATTACGACTTATGAGCAGTTAAGAATATTGGGGGACCAGTTGCTTGACATTGAGTGGGGCTATGCAGTTCTTGATGAAGGGCATAGAATAAGGAATCCAAATGCTGAAGTTACCCTAGTATGCAAACAGTTACAAACTGTACACCGCATAATAATGACCGGTGCACCCATTCAGAACAAACTTAGTGAACTGTGGTCATTGTTTGATTTTGTTTTTCCGGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGTGGATATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGATGTGCTGTGGTGCTGCGTGATTTAATAATGCCTTATCTTCTCCGACGCATGAAGGCGGATGTGAATGCCCAACTTCCAAAGAAAACTGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTACAGAGCATTTTTAGCGAGCACTGACGTGGAGGAAATATTGGATGGACAAAGGAACTCTCTTTCTGGAATTGATGTGATGCGCAAAATCTGCAACCACCCTGACCTACTTGAAAGGGAACATGCCTCCAGCGATCCAGATTATGGAAATCTAGAACGCAGTGGGAAAATGAAAGTTGTAGCTCAAGTCCTTAATGTTTGGAAGGAACAGGGTCACCGTGTTCTTCTTTTTACTCAAACCCAGCAAATGCTTGACATTTTTGAGAATTTTATGACAGTTTCTGGTCATATTTACCGCAGAATGGATGGTCTCACTCCCATAAGACAGAGAATGGCTTTAATAGATGAATTTAATGTCTCAACTGAAATATTTATTTTCATTTTAACGACCAAAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCTGACAGGGTGATCATCTTTGACCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCTTGGCGTATAGGCCAGAAACGGGATGTGACAGTTTATAGGTTGATAACACGTGGTACTATAGAGGAAAAAGTGTATCACCGTCAGATTTACAAACATTTTCTTACTAATAAGATATTGAAGAACCCACAGCAGAAAAGATTCTTTAAAGCCCGAGATATGAAAGATCTTTTTGTATTGAACTTGGATGGAGAAGCTGGATCAACTGAAACATCAAATATTTTCAGTCAAATATCTGAAGAAGTAAATATCGTCAGCACAAATGAAGATAATCACGAAAAGCATATAGATAGCCGAACTTCTGAATCAGGTTATGAGGATGTAGCTGATAATGACAGCAAGTCACAGAGAGGAAGGGGAAAAGAGAAAGTTGAACAGAGTGGTGGAGTTGATGATGAAACAAATATCCTGAAATGTCTGTTTGATGCTAATGGGATACATAGTGCCATGAACCATGATTTGATCATGAATGCCAATGATGAAGAGAAGATGAGACAAGAGGAGCAAGCTTCCCAGGTTGCAAAAAGAGCTGCAGAAGCTTTACGCCAGTCACGAATGCTCCGAAGCCATGATAGTGTATCTGTCCCAACATGGACAGGAAGGTCAGGTGCTGCTGGTGCACCGACATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAACCCCCAGGTGGCAAATAATGTCAAACCTTCTGATGAGTTACCCAGCAACGGAACTAACAAAATCAATGGATTTGCTGCTGGGGCATCTTCCGGTAAGGCCTTATCATCTGCTGAACTATTGGCTCGAATTAAAGGTAACCAAGAAAAGGCCATCGGTGCTGGGCTTGAACATCAGTTTGGTATGATGTCAAGTTCCACAAACCAAGCAAGGTCTTCTAGGGCTTCTGAAAATTCATCAGGATTTCAACCTGAGGTATTGATTCGGAAACTATGTACCTTCCTACAACAGCAAGGTGGAAGTTCCAATTCAGCCAGCATAGTTGAGTATTTTAAGGACAGGATACCCTCAAAAGATCTTGCTCTGTTCAAGAATCTGTTAAAGGAAATAGCAACTCTGCATAAAGGACCAAATGGGTCGCATTGGGTTCTGAAGCCAGACTATCAAGTATAG 3609 0.4145 MEEEQDRILLNTLGVKSANPEDIERHIIQKARNDVVTDTAEGSTKEENHHVSENVDPSSSTKAEELQQKLRALEFEIGAVASTIEDVENNGDYSGVGEDEQEQGIATGDDSSNGSDLQHVLAAERLRSLKNTKAQLEKELKKLGKDNNSKSTEREKVIFDLVKEERTSKRKLKEKDKKLQKSSGKKLKKVSFNDDVDFDAVLDAASAGLVETERDELVRKGILTPFHKLKGFERRFQQPETSSSHNAAEDESAMDLVSDSVERTARSISEAARARRTTKLLNSEDVPKLEAPTIPFQRLRKPLRVKDSNKKKRRPLPGRKWTKRVSSEDTCLEEHENANDGLDTSSCENLEAQDVELADHDSSYIILEGGLKIPDKIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREANKWYPKFHVELLHDSAQDSAPRKKQAKSDETKDESDSSNDNDYERTSPTKSKRKWESLINRVVGSEFGLLITTYEQLRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTDVEEILDGQRNSLSGIDVMRKICNHPDLLEREHASSDPDYGNLERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFENFMTVSGHIYRRMDGLTPIRQRMALIDEFNVSTEIFIFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNLDGEAGSTETSNIFSQISEEVNIVSTNEDNHEKHIDSRTSESGYEDVADNDSKSQRGRGKEKVEQSGGVDDETNILKCLFDANGIHSAMNHDLIMNANDEEKMRQEEQASQVAKRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPTSVRRKFGSTVNPQVANNVKPSDELPSNGTNKINGFAAGASSGKALSSAELLARIKGNQEKAIGAGLEHQFGMMSSSTNQARSSRASENSSGFQPEVLIRKLCTFLQQQGGSSNSASIVEYFKDRIPSKDLALFKNLLKEIATLHKGPNGSHWVLKPDYQV* 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0997 1202 Gene3D - 648 949 IPR027417 -
Lan20g0997 1202 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 393 592 IPR014001 -
Lan20g0997 1202 SMART helicmild6 755 838 IPR001650 -
Lan20g0997 1202 MobiDBLite consensus disorder prediction 464 496 - -
Lan20g0997 1202 CDD SF2_C_SNF 724 849 - -
Lan20g0997 1202 MobiDBLite consensus disorder prediction 302 328 - -
Lan20g0997 1202 MobiDBLite consensus disorder prediction 39 53 - -
Lan20g0997 1202 MobiDBLite consensus disorder prediction 919 962 - -
Lan20g0997 1202 Coils Coil 119 153 - -
Lan20g0997 1202 PANTHER SNF2/RAD54 FAMILY MEMBER 248 1093 - -
Lan20g0997 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 642 IPR027417 -
Lan20g0997 1202 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 248 1093 - -
Lan20g0997 1202 SMART ultradead3 377 600 IPR014001 -
Lan20g0997 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 644 921 IPR027417 -
Lan20g0997 1202 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 729 888 IPR001650 -
Lan20g0997 1202 Pfam Helicase conserved C-terminal domain 731 838 IPR001650 -
Lan20g0997 1202 Coils Coil 996 1017 - -
Lan20g0997 1202 Pfam SNF2-related domain 384 706 IPR000330 GO:0005524|GO:0140658
Lan20g0997 1202 MobiDBLite consensus disorder prediction 28 65 - -
Lan20g0997 1202 MobiDBLite consensus disorder prediction 236 255 - -
Lan20g0997 1202 MobiDBLite consensus disorder prediction 1016 1045 - -
Lan20g0997 1202 MobiDBLite consensus disorder prediction 86 115 - -
Lan20g0997 1202 CDD DEXHc_ERCC6 381 591 - -
Lan20g0997 1202 MobiDBLite consensus disorder prediction 304 320 - -
Lan20g0997 1202 Gene3D - 351 641 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0997 Lan-Chr20 10697970 10705929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0997 681 891 RAD5 or RAD16-like Gene Family AT5G22750 29.493 5.05e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan20g0997 SNF2_N 3.3e-61 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0997 K10841 - gmx:100820025 1853.18