Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0976 ATGGGAAGGACACCTTGTTGTGATAAGAAGGGTTTAAAAGGTCCATGGACACCTGAAGAGGATGAAATTCTTGCTAACTATATCAAGAAGAATGGTGGCCATGGAAGTTGGCGTTCTCTCCCTAAGTCAACAGGTCTTCTTCGTTGTGGTAAGAGTTGCAGGCTTAGGTGGACGAACTATCTTAGACCTGACATTAAACGTGGTCCCTTTACTGTTGAGGAAGAAAAACTAGTCATACAGCTTCATGGAATCCTAGGAAATAGGTGGGCTGCTATTGCATCTGAGTTACCAGGAAGAACAGACAATGAGATAAAAAATTTATGGAACACTCACTTGAAGAAACGTGTAAAAAGCCACCAGCCACTTTCCTCATCACATTCTCACAGTGTTGGCAAGGCACATCCTGCATCTCTTTCAACCCGTCACATGGCTCAGTGGGAAAGTGCTAGGCTTGAAGCTGAGGCCAGACTTTCAACTCAGTCATCACTCTTCAACTTCAACAACAACAACAACAATGCCAAAACTCATGATTATTATGACTTCTTCCTCCGCATATGGAACTCTGAAGTTGGAGAAGCATTTCGAAATAATAATAATAATGTTCACAAATTAGATGATGATAATAACAAAACTAGTTGCTATAACCAGAGTCCCATTTCTGGAGAGAAATGTGAATCAGTTTCAGCTATTACTGCAGAGTTAGGATTCTCAAAATCATGTGCAGAAGATGTGAATGGGATTTTTCATGGGTATGATTCGTCAAGCTCTAATGAGTTAGATGAGTCATCTGACACTGCCTTTCAGCTCTTGTTAGATTTTCCTATTAACAATGACATGAGTTTCTTAGAAGGAAACTCTTTTGTGTGTACCCTTTAG 876 0.403 MGRTPCCDKKGLKGPWTPEEDEILANYIKKNGGHGSWRSLPKSTGLLRCGKSCRLRWTNYLRPDIKRGPFTVEEEKLVIQLHGILGNRWAAIASELPGRTDNEIKNLWNTHLKKRVKSHQPLSSSHSHSVGKAHPASLSTRHMAQWESARLEAEARLSTQSSLFNFNNNNNNAKTHDYYDFFLRIWNSEVGEAFRNNNNNVHKLDDDNNKTSCYNQSPISGEKCESVSAITAELGFSKSCAEDVNGIFHGYDSSSSNELDESSDTAFQLLLDFPINNDMSFLEGNSFVCTL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0976 291 CDD SANT 69 112 IPR001005 -
Lan20g0976 291 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan20g0976 291 Pfam Myb-like DNA-binding domain 13 61 IPR001005 -
Lan20g0976 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 61 IPR017930 -
Lan20g0976 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan20g0976 291 Gene3D - 68 134 - -
Lan20g0976 291 CDD SANT 15 61 IPR001005 -
Lan20g0976 291 Gene3D - 12 66 - -
Lan20g0976 291 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 286 - -
Lan20g0976 291 SMART sant 12 63 IPR001005 -
Lan20g0976 291 SMART sant 66 114 IPR001005 -
Lan20g0976 291 MobiDBLite consensus disorder prediction 118 137 - -
Lan20g0976 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan20g0976 291 ProSiteProfiles Myb-like domain profile. 13 61 IPR001005 -
Lan20g0976 291 PANTHER BNACNNG13680D PROTEIN 1 286 - -
Lan20g0976 291 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0976 Lan-Chr20 10201254 10205145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0976 1 285 MYB Transcription Factor Family AT3G61250 61.149 3.34e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0976 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0976 K09422 - gmx:100800408 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0976 20 10201254 10205145 Lan13g0898 13 11800603 11804630 PCT