Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0975 ATGAACAATAGAGGGAGATATCCACCCGGTATGGGTTTAGGGCGAGGCGGCGGCAGCGGTTTGAACCCTAACCCTGGGTTTCAACAAAGGCCACCACAACAACAGTATGTACAGAGGCACATAATGCAGCAACAGCAACAGCAGTATCAGCAGCAGCAACAGCAGTATCAGCAGCAGCAGCAACAGCAATATCAGCAACAGCGACAACAGCAACAACAGCCACAACAGTGGTTGAGAAGGACCCAGTTAGGTGGTGGGAATGACACCAATGTGGTTGAGGAAGTTGAGAAGACTGTACAGTCTGAAGCAATAGATCAAAGTTCACAAGATTGGAAGGTGGGACTAAAGATTCCAGCTGCTGATACACGCTATAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAGAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTCGGGCTAAAAATGGAACTGGCAAAACAGCTGCATTTTGTATTCCATCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTGGTTCCAACACGAGAGTTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTCGGAAAGCATTTGAAAATCCAAGTTATGGTTACAACTGGTGGTACCAGCCTGAAAGATGATATTATGCGTTTATATCAACCAGTTCATTTACTAGTTGGAACTCCGGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCGTTCTGAAAGATTGCTCAGTGCTTGCTATGGACGAGGCTGATAAGCTTCTGTCCCCGGAGTTCCAGCCTTCAATAGAGCAGCTGATTCAATTTCTTCCGCGGAACCGTCAAATACTTATGTTTTCAGCAACCTTTCCTGTTACTGTGAAGGACTTCTCAGATAGACACCTTCGTAAGCCATATATCATTAACCTTATGGATGAGCTAACTCTGAAAGGTATTACACAGTTTTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTCTTCTCTAAGCTGCAAATAAACCAATCAATCATCTTCTGCAACTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGGTATTCATGTTTTTATATTCATGCAAAGATGTTGCAAGACCACCGTAACAGAGTATTTCATGATTTCCGCAATGGCGCATGCAGGAATCTTGTATGTACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTCATTAATTTTGATTTTCCCAAGAACTCGGAAACTTATCTTCACCGGGTTGGTCGTTCAGGGAGGTTTGGACACCTTGGTTTAGCAGTGAACTTGATCACGTATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAACTTGGCACTGAGATAAAGCAAATTCCGCCACACATTGATCAGGCAATATATTGCCAGTAA 1530 0.4242 MNNRGRYPPGMGLGRGGGSGLNPNPGFQQRPPQQQYVQRHIMQQQQQQYQQQQQQYQQQQQQQYQQQRQQQQQPQQWLRRTQLGGGNDTNVVEEVEKTVQSEAIDQSSQDWKVGLKIPAADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPSLEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSVLAMDEADKLLSPEFQPSIEQLIQFLPRNRQILMFSATFPVTVKDFSDRHLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCQ* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0975 509 MobiDBLite consensus disorder prediction 22 54 - -
Lan20g0975 509 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 3 509 - -
Lan20g0975 509 Gene3D - 87 339 IPR027417 -
Lan20g0975 509 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 135 163 IPR014014 GO:0003724
Lan20g0975 509 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 3 509 - -
Lan20g0975 509 Pfam Helicase conserved C-terminal domain 361 467 IPR001650 -
Lan20g0975 509 Gene3D - 340 509 IPR027417 -
Lan20g0975 509 Coils Coil 39 69 - -
Lan20g0975 509 SMART ultradead3 154 350 IPR014001 -
Lan20g0975 509 SMART helicmild6 386 467 IPR001650 -
Lan20g0975 509 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 166 336 IPR014001 -
Lan20g0975 509 CDD SF2_C_DEAD 347 476 - -
Lan20g0975 509 Pfam DEAD/DEAH box helicase 160 324 IPR011545 GO:0003676|GO:0005524
Lan20g0975 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 489 IPR027417 -
Lan20g0975 509 MobiDBLite consensus disorder prediction 1 54 - -
Lan20g0975 509 CDD DEADc_DDX6 137 337 - -
Lan20g0975 509 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 506 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0975 Lan-Chr20 10161465 10168566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0975 135 506 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 1.16e-92 286