Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0973 ATGGCCAAGGACAGAGAGAGAGATTCATACGCAGATAACGAAAGGAACGAGTTTGATGAGTCAACCCAACACGATGAAGAACCTGACCCAGTGGAGGAAATCCAACGAGTAATCGAATCGGTGGCTCAATTTGGCGCATATAGAAGGACGCAGAGGAAAGAATGCCACAACCTTGTTCGTCGTTTCAAGCTCACGTTGCCCCTTATAGAAGAGGTTCGTGACCTCAACGAACCCATTCCTGAAATGGGTTTGGCATGGTTAAGAAACTTGAGAGATGCGCTGTTTTGTGCCAAAGAACTATTGAGATTGTGCAGCCAAGGAAGCAAGATTCACCTTGCACTGGAGGGTGAGGCTGTTATGGTAAGGTTTCATTGTGTTTATGAAAAAATGAGTCAGGCCTTCGATGGTGTTCCTTGTGATCTATTGGGGATCTCAGAGGAAGTCAAAGAACAGCTTGAGCTAATGCATGTGCAACTCAAACGAGCCAGAAAGAGAACAGACACACAAGACATAGAACTTGCAATGGATATGATGGTTGTATTTTCTGAAGAGGATGATAGAAATGCTGATAGTGCTATTGTTGAAAGACTAGCCAAAAAGCTAGAACTTCATAGTGTTGATGATCTTAACATTGAAACTATGGCTATAAGGAAACTTGCCAAAGAAAGAAAATGGCAACATGCAGAAAGTACTCAACGAATGATTCGAGTTCTTAACAAATTCAAACGAATTGTGGGAATGGAAGAAACCAATGTTGTTGATGATCCTATCATGCCTAGGATGCTTCAGAAGTGTACATCTTTGGTCATCCCTCATGAGTTTCTCTGCCCAATTACACTAGAAATCATGACAGATCCTGTTATTGTCGCAAGTGGGCAGACATATGAAAGGGAAAGCATAGAGAGGTGGTTCAAATCCAATCATAAGACATGCCCAAAGACTAGACAACCTTTGGCTCACTTGTCATTAGCACCAAATTATGCCTTAAAAAACTTGATTGCAGTATGGTGTGACAACAACAACTTCAAACTTCCTAAAAAGGTTACTTCTTTAGATCAAGAAAGCTGCTCTATGGATAACACAGAAGAAATTCCATCATTGGTTGAGAGTTTATCATCTATTCATTTAGAAGAGCAGAGAAAGGCAGTGGAGAAGATACGTTTGCTATCGAAGGAAAATGCCGAAAACCGGGTTTTGGTTGCTGAGCATGGTGGAATACCACCATTAGTGCAACTTTTGTTCTACCCTGACCCAAAAATACAAGAGCATGCTGTGACAGCACTATTAAATTTATCAATTGATGAAGGAAACAAGAAACTTATATCAAAAGATGGAGCTATTCCTGCTATTATAGAAGTGTTAGAGAATGGAAGTACTGTGGCTAAGGAAAATTCTGCAGCAGCATTATTTAGCTTGTCAATGCTTGATGAGAATAAAGAAGTTGTTGGGTTATCAAATGGAATTCCTCCATTGGTAAATCTATTGCAGAATGGGACAGTTAGAGGGAAAAAAGATGCTGCTACAGCACTCTTTAACTTGTCTCTTATTCATGCAAACAAAGGTCGAGCTATTAGTGCTGGTATTGTCGCACCTTTACTACAATTGCTCAAGGATATAAACTTAGGCATGATTGATGAAGCACTCTCCATTCTACTACTCCTTGTATCGAATCCAGAAGGGAGACAAGAGATTGGACAACTGTCTTTCATTGAAACTCTTGTCGATTTCACTCGAGAAGGGACCCCGAAGAACAAGGAATGTGCTACTTCTGTTCTTCTTGAGTTGTGTTCTACAAATTCCTCATTTATATTGACAGCACTTCAGTTTGGAGTATATGAGCATCTAGTTGAGATAAAACAAAGTGGGACAAATAGGGCTAAAAGGAAAGCAAATGCAATCTTAGAGCTAATAAGCAAGAGTGAGCAAATTTAA 1932 0.4006 MAKDRERDSYADNERNEFDESTQHDEEPDPVEEIQRVIESVAQFGAYRRTQRKECHNLVRRFKLTLPLIEEVRDLNEPIPEMGLAWLRNLRDALFCAKELLRLCSQGSKIHLALEGEAVMVRFHCVYEKMSQAFDGVPCDLLGISEEVKEQLELMHVQLKRARKRTDTQDIELAMDMMVVFSEEDDRNADSAIVERLAKKLELHSVDDLNIETMAIRKLAKERKWQHAESTQRMIRVLNKFKRIVGMEETNVVDDPIMPRMLQKCTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIERWFKSNHKTCPKTRQPLAHLSLAPNYALKNLIAVWCDNNNFKLPKKVTSLDQESCSMDNTEEIPSLVESLSSIHLEEQRKAVEKIRLLSKENAENRVLVAEHGGIPPLVQLLFYPDPKIQEHAVTALLNLSIDEGNKKLISKDGAIPAIIEVLENGSTVAKENSAAALFSLSMLDENKEVVGLSNGIPPLVNLLQNGTVRGKKDAATALFNLSLIHANKGRAISAGIVAPLLQLLKDINLGMIDEALSILLLLVSNPEGRQEIGQLSFIETLVDFTREGTPKNKECATSVLLELCSTNSSFILTALQFGVYEHLVEIKQSGTNRAKRKANAILELISKSEQI* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0973 643 Pfam U-box domain 270 340 IPR003613 GO:0004842|GO:0016567
Lan20g0973 643 Gene3D - 356 480 IPR011989 -
Lan20g0973 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 404 446 IPR000225 GO:0005515
Lan20g0973 643 SUPERFAMILY RING/U-box 270 345 - -
Lan20g0973 643 MobiDBLite consensus disorder prediction 1 30 - -
Lan20g0973 643 PANTHER U BOX DOMAIN-CONTAINING 22 641 - -
Lan20g0973 643 SMART Ubox_2 273 336 IPR003613 GO:0004842|GO:0016567
Lan20g0973 643 CDD RING-Ubox_PUB 274 316 IPR045210 -
Lan20g0973 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 486 528 IPR000225 GO:0005515
Lan20g0973 643 SMART arm_5 516 556 IPR000225 GO:0005515
Lan20g0973 643 SMART arm_5 434 474 IPR000225 GO:0005515
Lan20g0973 643 SMART arm_5 475 515 IPR000225 GO:0005515
Lan20g0973 643 SMART arm_5 393 433 IPR000225 GO:0005515
Lan20g0973 643 SMART arm_5 557 597 IPR000225 GO:0005515
Lan20g0973 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 344 IPR013083 -
Lan20g0973 643 SUPERFAMILY ARM repeat 363 638 IPR016024 -
Lan20g0973 643 Gene3D - 28 141 IPR036537 GO:0007166
Lan20g0973 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Lan20g0973 643 Gene3D - 481 642 IPR011989 -
Lan20g0973 643 Pfam Armadillo/beta-catenin-like repeat 393 432 IPR000225 GO:0005515
Lan20g0973 643 Pfam Armadillo/beta-catenin-like repeat 476 514 IPR000225 GO:0005515
Lan20g0973 643 Coils Coil 145 165 - -
Lan20g0973 643 ProSiteProfiles U-box domain profile. 269 343 IPR003613 GO:0004842|GO:0016567
Lan20g0973 643 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 22 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0973 Lan-Chr20 10053515 10057634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0973 1 643 U-box Gene Family AT5G42340 61.329 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0973 - - gmx:100777362 988.408