Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0946 ATGGATGGAGTTAGTTGCACTGATGAAACCACAACAACCAGTGACTCACCTTCTATATCTCTTCCCTCGAAGCTATCTTTGCCACCACTGCCAAACACGCTCAGCCGTGTCGGAAGCGGAGCCAGCACCGTTGTCGATCCTGACGGCGTTTTCTGCGGCGGTGCAGAAGCGGAGTCCCGTAAACTTCCTTCGTCAAAATACAAAGGCGTGGTGCCTCAGCCTAACGGACGTTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTTGGAACCTTCAACGGTGAAGATGAAGCCGCTAGAGCCTACGACATCGCCGCCGTCAGATTCCGCGGTAAGGACGCCGTAACCAACCGTAAGACCTTCGCAAGTGACGGTTCCGGCGACGGGGAAATCGAGTTCTTGAACTCGCATTCCAAGTCTGAGATCGTCGACATGCTCCGAAAACACACCTACCACGACGAGTTACAACAGAGCAAGAACAACACGTGCGGGAAGCAGCGGCGACACCACGAAAGTTCAGCAGCGACACCGTTTGGAAATCGAGGCGCGTGTGATACGAAAGCGCGTGAGATTCTGTTCGAGAAAACGGTTACGCCGAGTGACGTCGGGAAATTGAATCGATTGGTTATACCAAAGCAGCATGCTGAGAAGCACTTTCCGTTAAGCGACGGAAGCTCGCCGTCGACGGCGGCGGCGAAGGGAATGCTTTTGAATTTTGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCATATTGGAATAGTAGCCAGAGCTACGTTTTAACCAAAGGGTGGAGCCGGTTCGTTAAAGAGAAGAACCTAAAAGCCGGTGACGCGGTTCAGTTTTACCGGTCCACTGGACCGGACCGGAAGCTCTACATTGACAGCAAGAAAAGGAGTGATGAGGTTGGACCGGTAGTTGAACCGGTTCATATGGTTCGGCTTTTTGGGGTCAACCTTTTAAATCTTCCTGGTTCTGATGTTGTTGGTGGTAATTGCAACGGAAAGAGGAAAGAGATGGAACTATTTGCTTTAGAATGTAGCAAAAAGCAAAAAATAATTGGAGCTTTGTAA 1083 0.5125 MDGVSCTDETTTTSDSPSISLPSKLSLPPLPNTLSRVGSGASTVVDPDGVFCGGAEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNGEDEAARAYDIAAVRFRGKDAVTNRKTFASDGSGDGEIEFLNSHSKSEIVDMLRKHTYHDELQQSKNNTCGKQRRHHESSAATPFGNRGACDTKAREILFEKTVTPSDVGKLNRLVIPKQHAEKHFPLSDGSSPSTAAAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDAVQFYRSTGPDRKLYIDSKKRSDEVGPVVEPVHMVRLFGVNLLNLPGSDVVGGNCNGKRKEMELFALECSKKQKIIGAL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0946 360 SUPERFAMILY DNA-binding domain 65 119 IPR016177 GO:0003677
Lan20g0946 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 360 IPR044800 GO:0003700
Lan20g0946 360 ProSiteProfiles B3 DNA-binding domain profile. 195 303 IPR003340 GO:0003677
Lan20g0946 360 Gene3D - 184 309 IPR015300 -
Lan20g0946 360 SMART B3_2 195 301 IPR003340 GO:0003677
Lan20g0946 360 CDD AP2 65 119 IPR001471 GO:0003700|GO:0006355
Lan20g0946 360 Pfam B3 DNA binding domain 195 297 IPR003340 GO:0003677
Lan20g0946 360 MobiDBLite consensus disorder prediction 159 183 - -
Lan20g0946 360 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Lan20g0946 360 CDD B3_DNA 194 297 IPR003340 GO:0003677
Lan20g0946 360 SUPERFAMILY DNA-binding pseudobarrel domain 193 295 IPR015300 -
Lan20g0946 360 MobiDBLite consensus disorder prediction 1 32 - -
Lan20g0946 360 Gene3D AP2/ERF domain 65 122 IPR036955 GO:0003700|GO:0006355
Lan20g0946 360 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 360 - -
Lan20g0946 360 ProSiteProfiles AP2/ERF domain profile. 66 121 IPR001471 GO:0003700|GO:0006355
Lan20g0946 360 SMART rav1_2 66 127 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0946 Lan-Chr20 9286406 9287889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0946 1 360 RAV Transcription Factor Family AT1G68840 61.702 6.63e-139 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Lan20g0946 B3 2.8e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0946 K09287 - gmx:100801107 490.345