Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0942 ATGGAAGTTCTGTCTGTGCCAGTCACATTCACCAAATATAAAACCTTTTCCTTTGTCAAACAAAAAACAACCCAAATTCAAGTCCTTTCAATAAACATAACAAAACTACCCAACAATTACAATAAGAAACTTTATTCTTCTTATTCTTCTTCTTCCAAATTTTCATGTAATGATTGGTTATTAGCAGCAACAACATACAGTTCCTTATCAACTTCCACAACACAGAACCGCCATTGGATGGTGCTCATGGAGAGTCCTCCTCATGGGGTTCATGAGAAGCCACAAGTCATTGATTATTATGTGAAGACTCTACAGAAACTTCTTGGAAGTGTGATAGATGCTCAAATGTGTATATATGATGCTTCCTGGGAAACACACTTTGGTTTTTGTTGTGACATTGATGAAGATTTATCCTCCCAGCTGGCCAGTCTACCTGGGGTCTTATTGGTTAGGCCTGATTCGGATTTCAACTCTCTGAAAAAAAACTATAGTTTATCAAATGTACAGGCAGCTTTCCCATCAATACTACAAACTGAAACTAATTTGTTGTTCCCTGCTGGGAGTTCGAAGCACTGGCTTGTTAGAATGGGCAAACCTGGGGTTGGGGTTGTTACAAAGGCTCAAATTGTCGATCATTATGCTCAAATACTGACCAAGGTCATGGGAAACGAGATGGATGCACAAATGTGCATATATCATGTTTCCTGGAAATCCAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACAGGCACTAGCTGGTGTGCCTGGTGTCTTATCAGTTCAGCCAGATAATAATTTTGAGTCGGAAACTAAGGATTATGGAGGTAGTAACTTGAAAAATAGTTTGGTGAAGTCTGATGAAGGAAATCAGGCAGCTCCCTTGAAAACAAAGAAGCTTTTTGTGACAGGTCTATCATTTTATACATCAGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGAGCTTGTACACGTTAAGGTAATTATGGATAAGATTTCGAAAAGGTCCAAGGGTTATGCATTTGTTGAATATACTACAGAGGAGGCTGCAAGTGCAGCTCTGAAAGAGATGAATGGCAAGATTATTAATGGATGGATGATAGTGGTAGATGTTGCCAAGACTAACCCACCCAGCAACCGGGTTCGTGCAAAACCATCAATTTGA 1176 0.3963 MEVLSVPVTFTKYKTFSFVKQKTTQIQVLSINITKLPNNYNKKLYSSYSSSSKFSCNDWLLAATTYSSLSTSTTQNRHWMVLMESPPHGVHEKPQVIDYYVKTLQKLLGSVIDAQMCIYDASWETHFGFCCDIDEDLSSQLASLPGVLLVRPDSDFNSLKKNYSLSNVQAAFPSILQTETNLLFPAGSSKHWLVRMGKPGVGVVTKAQIVDHYAQILTKVMGNEMDAQMCIYHVSWKSNFGFCCELDEDCAQALAGVPGVLSVQPDNNFESETKDYGGSNLKNSLVKSDEGNQAAPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVHVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPSNRVRAKPSI* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0942 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 378 IPR000504 GO:0003723
Lan20g0942 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 368 IPR000504 GO:0003723
Lan20g0942 391 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 38 385 IPR039206 GO:0016554
Lan20g0942 391 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 38 385 - -
Lan20g0942 391 SMART rrm1_1 301 374 IPR000504 GO:0003723
Lan20g0942 391 Gene3D - 271 390 IPR012677 -
Lan20g0942 391 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 62 157 IPR037045 -
Lan20g0942 391 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 184 270 IPR037045 -
Lan20g0942 391 SUPERFAMILY RNA-binding domain, RBD 293 384 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0942 Lan-Chr20 9209516 9212487 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0942 278 380 C2H2 Transcription Factor Family AT2G19380 32.039 1.20e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0942 - - gmx:100791652 553.903