Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan20g0938 | ATGATTTCTTCTGGGATAAACTTGGTGATGACTGTGATTGGGTTTGTGGTGAGCACCATGTTCATTGTTTTTATATGCACAAGGCTTATTTGTGCTAGAATTCACTTGAATGCTTCTAGGAGATCATTTCCTGTAGCTGCAAGATCCAATCTCAGCATGATGGAACGGGGTTGCCATGGTCTTGAACGCGCAGCTGTAGCCAAATTTCCAACAAAGAAGTACAGTGACAAGTATTTTTCTGATGCAGAAAATACTCAATGCCCAGTTTGCCTGTCTGAGTATCAAGGCGAAGATTTACTGCATATCCTCCCGTATTGCGGACATTCATTCCATGTGACCTGCATAGACTTATGGCTGCAGCAGAATTCAACTTGTCCTGTCTGTCGAATATCGTTGCGTGAATTTCCCGAGAGAAAGCGACTAATGCAGCCCATGTTCAGCTTCGCTTTGAGACCTCAGCATAACATGGAATCGTTTGACACTGATCATTATCACTGTATGATGACTAATAACGGATTATCATCAAGAACCCCGGACAATAATGGGGTGAACACGATACAAGAGGATCATTTTCCACCCGAGGGTGGTCTAGCAGTTGCTAGGGACAATATCACATGTTTAAGTCAGGGTGGTCTCATTAAAGATGAAGGGAAGAAGCATGTAGAGAGCCCATCAAATTTGTAG | 684 | 0.4313 | MISSGINLVMTVIGFVVSTMFIVFICTRLICARIHLNASRRSFPVAARSNLSMMERGCHGLERAAVAKFPTKKYSDKYFSDAENTQCPVCLSEYQGEDLLHILPYCGHSFHVTCIDLWLQQNSTCPVCRISLREFPERKRLMQPMFSFALRPQHNMESFDTDHYHCMMTNNGLSSRTPDNNGVNTIQEDHFPPEGGLAVARDNITCLSQGGLIKDEGKKHVESPSNL* | 228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan20g0938 | 227 | Pfam | Ring finger domain | 86 | 129 | IPR001841 | - | |
| Lan20g0938 | 227 | SUPERFAMILY | RING/U-box | 80 | 135 | - | - | |
| Lan20g0938 | 227 | PANTHER | OS11G0150450 PROTEIN | 1 | 226 | - | - | |
| Lan20g0938 | 227 | CDD | RING-H2_PA-TM-RING | 86 | 129 | - | - | |
| Lan20g0938 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 134 | IPR013083 | - | |
| Lan20g0938 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 87 | 129 | IPR001841 | - | |
| Lan20g0938 | 227 | PANTHER | OS11G0150450 PROTEIN | 1 | 226 | - | - | |
| Lan20g0938 | 227 | SMART | ring_2 | 87 | 128 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan20g0938 | Lan-Chr20 | 9164084 | 9167995 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan20g0938 | 8 | 136 | C3H Transcription Factor Family | AT4G10160 | 34.109 | 7.85e-19 | 80.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan20g0938 | - | - | gmx:100794979 | 403.675 |