LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan20g0916	ATGCTTGGTGGGTTGGTTGATACAGGGATTAGAGAGGTTGGGTTGGGTTCTATAGTTAGTGGCGAGGAGGGTATATATTCTGCGAGGATGACAGATTTTCAGCCTCTACAGCAGAAGCCTGAACCTGAACCTGCTGAGGCTCGTGCCGGGTATGAGTGTGGGATGGGGGAGTTTATGCGTGGTCAGTTGGATGATTGTATGCCATTTGCTTCATGTAGCTCTTCTCGCGCTCAGGATGATGAGGATGAGGAGGGTGATCAGCTGGTTCGCAGGAGACGGAGGTCTGATCTTGAAGGGGATGATTTGGCAGAGTCATCAGCTGCACGGAGGCGCCATTCACGTATTTTGAGTAGATGGGCTGCCCGGCAGGCACAGGAGATGATTACTACTATTGAGAGGAGGAATCGAGAATCTGAATTGATGGCGCTCGCAGGATTACACACTGTCTCGATGTTGGACTCCTCTTTTCTGAGGGGTTCACAGTCTCCAACTTCTGGACAGGAGGGGAACGTGGAGCGGCCCAGCACTCAAGCATCTTCCATTCTGCAGATGTGGCGTGAATTGGAGGATGAACATTTATTGAATCGGGCACATGAAAGGATGAGGGAAAGGTTGCAGCAGCAAAGAAGTCCCGAGTCTAATACTAATGTGTCAAGTACCATGTCTGACAGTCGAGGCAGTGAGAATCAAAGAAGTTTGGGGGATGCAACTGAAAATGATTATGGTGCTTGGTCACACAATCACATTGGACCACGAAATGCACATGATGATGGTAATGGGTCTACCAGGGAGCAGTCTCCTGATCTTGGCGAAGTTGAGAGGGAGAGAGTTAGACAGATTGTTCGGGGATGGATGGAAAGTGGTATTAGTGATCATTCATCTAATGTGAGTCAGAGAAACAATAACCGTAGAGCAGAGTGGCTTGGAGAAACTGAGCGAGAGAGGGTAAGAATTGTCAGGGAATGGGTGCAAATGAATAGCCAGCAGAGAGGTTCACGTGGGAACCGAAGGGATGTTCAAGTGAGTGATGGTGCTCAAGTTGATCGAGTGCGTGATGTGGTAGCTGATCATGATGATGGCCAGCCCGAGCATGTCCGCCGGGATATGTTGAGGATGCGTGGAAGACAAGCTCTAGTTGATTTGCTTGTGAGGGTAGAAAGGGAAAGACAGAGAGAACTGCAGGGCTTGTTGGAGCATAGAGCTGTTTCTGATTTTGCTCATCGCAACCGCATTCAGTCATTGCTCAGAGGTAGATTCCTCCGAAATGAAAGACCTGTTGAAGATGAGAGGCCTCCTTCTGTGGCTGCTAGCGAATTAGTTCAGTTAAGACAACAGCACACAGTCTCTGGTTTAAGGGAGGGGTTTCGCTCAAGATTAGAAACTAACAGTAACGTTAGTGAATCAAGAAGTGATGAGAACCAAGGAAACAATCTGGTAGATGCCCAACAAGAAGATTATGAACACGAGCAGATTAGAAGCCTTGAAACTGATGTGAGTCAGCTGCCTAATCAAACAGGAGCTTTGGAGAACAGCACAAATGAGAATATTAGCTGGCATGAAGCTAGTAATGATGGAGGGAATTGGCAGGAACAAATTGCTGAAGATGGCAGAGGAAACTGGCAGCAGAGAACTTATGGTCCATTCAATCAGTTAAGAGATGGAAGTGCAGTCAGTGATTGGCCACAGGATACTCCCAGAAATTTAGCTAGGGAAGAGTCTCATCCACAAGAGGCTCAAAGAATTTGGCATGAGGATAGCACAAGGGAAACTGTTGGTAATTGGTCTGAAGTACCTCCTGGAGCTTCAAGGAATCATCGTGGCGTTCCTGTTAGAAGAATCAATAGATTTCACCCCCCTGATGATGATAATGTGTACAGCATGGAGCTTAGAGAACTTCTGAGCAGGAGAAGTGTTTCTAACCTTCTTCGTAGTGGCTTCCGAGAAAGTTTGGACCAACTAATACAGTCATATGTGGAAAGGCAAAGTCATGCACCAATTAACTGGGATTTGCACAGAAACTTGCCAACACCAACTCTTGCCTCACCTGAACTGGACTCTGGTCAGCAAGGTGTTGAACGTAATGAGGGTCAGCGTGAAGCCATTAACAGACCTTCACTGGTTATGCCTTCACCACCTGTACCTCCACCACAACCACTGTGGCACCAGGATTTGCATCAAACTGGATGGCCTCGCCATAGTGTGCATCGTTCTGAAATGGAATGGGAGATGATGAATGATTTACGATCTGACATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAGCTGGAGTTGCAGCGCTCTGTCAGACAGGAAGTCTCTGCAGCTTTAAACCGCTCAGCTGGTGAAAATGGATTGGGTGCTGAGACATCTGATGATGGGTCTAAATGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAGCCATATTGACTCACTTTTGTACAGATGTGGGCATATGTGCACTTGTTCAAAATGCGCCAATGAGTTAGTTCGTGGTGGAGGTAAGTGTCCTTTATGCCGAGCACCCATTGTTGAGGTGGTCCGAGCATATTCCATACTGTAA	2604	0.4735	MLGGLVDTGIREVGLGSIVSGEEGIYSARMTDFQPLQQKPEPEPAEARAGYECGMGEFMRGQLDDCMPFASCSSSRAQDDEDEEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGQEGNVERPSTQASSILQMWRELEDEHLLNRAHERMRERLQQQRSPESNTNVSSTMSDSRGSENQRSLGDATENDYGAWSHNHIGPRNAHDDGNGSTREQSPDLGEVERERVRQIVRGWMESGISDHSSNVSQRNNNRRAEWLGETERERVRIVREWVQMNSQQRGSRGNRRDVQVSDGAQVDRVRDVVADHDDGQPEHVRRDMLRMRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERPVEDERPPSVAASELVQLRQQHTVSGLREGFRSRLETNSNVSESRSDENQGNNLVDAQQEDYEHEQIRSLETDVSQLPNQTGALENSTNENISWHEASNDGGNWQEQIAEDGRGNWQQRTYGPFNQLRDGSAVSDWPQDTPRNLAREESHPQEAQRIWHEDSTRETVGNWSEVPPGASRNHRGVPVRRINRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQSHAPINWDLHRNLPTPTLASPELDSGQQGVERNEGQREAINRPSLVMPSPPVPPPQPLWHQDLHQTGWPRHSVHRSEMEWEMMNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSDDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVVRAYSIL*	868

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	202	273	-	-
	Lan20g0916	867	SUPERFAMILY	RING/U-box	814	860	-	-
	Lan20g0916	867	PANTHER	ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED	30	867	-	-
	Lan20g0916	867	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	799	865	IPR013083	-
	Lan20g0916	867	Coils	Coil	744	764	-	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	83	109	-	-
	Lan20g0916	867	CDD	mRING-HC-C3HC5_NEU1	814	854	-	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	72	109	-	-
	Lan20g0916	867	Pfam	Zinc finger, C3HC4 type (RING finger)	812	859	-	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	250	273	-	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	156	178	-	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	504	606	-	-
	Lan20g0916	867	Coils	Coil	188	208	-	-
	Lan20g0916	867	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	30	867	-	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	504	562	-	-
	Lan20g0916	867	ProSiteProfiles	Zinc finger RING-type profile.	815	854	IPR001841	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	451	477	-	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	565	590	-	-
	Lan20g0916	867	MobiDBLite	consensus disorder prediction	208	236	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan20g0916	Lan-Chr20	8759876	8765734	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan20g0916	797	861	C3H Transcription Factor Family	AT3G06140	39.394	1.02e-06	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan20g0916	-		-	lang:109336295	1664.43