Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0911 ATGGGCCATGAAACCCCACTGGTCTCATCTGCTAACACCCCTCCTCTGCCACTATCAGTGGCACAGCCGCCACTGCCATCAACACCAGTCTTAGTTGCATGTGCTGCTTCTGCATCACCAATTTCTCCTACTTCTCTTGCTCCTGGGTTTAGGTTTCACCCCACTGATGAAGAACTCGTTATTTATTATCTTAAGCGCAAGGTTGGAGGGAAAAGCTTCCGTTTTGATGCAATATGTGAGGTTGACGTTTACCGCAGCGAGCCTTGGGACCTTGCAGATAAGTCAAGGTTGAAGACAAGGGATCAAGAATGGTATTTTTTCAGTGCATTGGACAAGAAATATGGGAATGGTGGCAGAATGAATAGAGCTACAAACAAAGGGTACTGGAAAGCCACTGGGAATGACCGTCCAGTTAGGCATGAACAAAGGACTGTGGGTTTGAAGAAAACTTTGGTGTTTCATAGCGGCCGGGCTCCGGATGGGAAGAGAACCAATTGGGTCATGCATGAATATAGACTTGTTGATGACGAGCTGGAGAAGGCTAGGACTGTGAACGGGTCCTCTCAGGATGCATTTGTTTTGTGTAGAGTGTTTCACAAGAATAACATAGGACCTCCAAATGGACAACGATATGCACCTTTCGTTGAAGAGGAGTGGGATGACGAGTCAAGTTTAGTTCCTGGGGCAGAGTCTGCTAAACCCATTTCTGTTACTCAACAACCATGTGTCAAAACAAATGACCATGTTTTATGTATTCAATGGAGAAAAGATGCCGAACAGGATACTCAGTCTGTTACCAAGGCTCCATTTGATGTCAACAAGCTTCCTATAGAGACTCAAAATCTTCTTGCTGTGTGCAAGAGGGAGAGTATGGCTGAGTTCCCATCACCGGAAAAGGAGGACTCTAAGCCTACGCGAGATGAGTGTCCTTCACCCCATGCAGATAATCACAAGGCTTACTCTCAAATATACAAAAGGAGGCGGTATAACTTGAATAACCATTTGAACGCTTCTGGAGATTCAATCAGAACCAGCCAGGATCCGTGCTCATCGACAATAACTACGGCTGCTACGTTACCCCCAACGGCAACTGCCATTGCCAACCCCACAACTGTCAGCACTACACCAAAAAAACATTTCCTGTCTGCACTGGCGGAGTTTACTCTGATGGAATCTCTTGAATCGAAGGAGGTTCAACCACCAGATTTTGATCCTGATAATCTCGAGTCAACTGTACCTCCCAGCTGTGTAAAATTCATCAAACACTTGCAGAGTGAGGTGCAAAAGCTTTCTGTTGAAAGGGATGCTATGAGGTTTGAGATGATGAGTTCTCAAGCAATGATTAACATTCTTCAGTCACGGGTCGATCGTCTGAGCAAAGATAATGAAGTGTTGAAGAATATAGTCCGGAATTCTTAG 1419 0.4531 MGHETPLVSSANTPPLPLSVAQPPLPSTPVLVACAASASPISPTSLAPGFRFHPTDEELVIYYLKRKVGGKSFRFDAICEVDVYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATNKGYWKATGNDRPVRHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDDELEKARTVNGSSQDAFVLCRVFHKNNIGPPNGQRYAPFVEEEWDDESSLVPGAESAKPISVTQQPCVKTNDHVLCIQWRKDAEQDTQSVTKAPFDVNKLPIETQNLLAVCKRESMAEFPSPEKEDSKPTRDECPSPHADNHKAYSQIYKRRRYNLNNHLNASGDSIRTSQDPCSSTITTAATLPPTATAIANPTTVSTTPKKHFLSALAEFTLMESLESKEVQPPDFDPDNLESTVPPSCVKFIKHLQSEVQKLSVERDAMRFEMMSSQAMINILQSRVDRLSKDNEVLKNIVRNS* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0911 472 PANTHER NAC DOMAIN-CONTAINING PROTEIN 78-LIKE 38 471 - -
Lan20g0911 472 MobiDBLite consensus disorder prediction 1 20 - -
Lan20g0911 472 SUPERFAMILY NAC domain 41 201 IPR036093 GO:0003677|GO:0006355
Lan20g0911 472 Coils Coil 420 440 - -
Lan20g0911 472 MobiDBLite consensus disorder prediction 1 16 - -
Lan20g0911 472 Coils Coil 448 468 - -
Lan20g0911 472 Gene3D NAC domain 55 203 IPR036093 GO:0003677|GO:0006355
Lan20g0911 472 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 38 471 - -
Lan20g0911 472 MobiDBLite consensus disorder prediction 292 320 - -
Lan20g0911 472 ProSiteProfiles NAC domain profile. 46 200 IPR003441 GO:0003677|GO:0006355
Lan20g0911 472 Pfam No apical meristem (NAM) protein 48 173 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0911 Lan-Chr20 8686619 8692630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0911 384 466 NAC Transcription Factor Family AT3G10480 44.828 1.14e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan20g0911 NAM 7.7e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1302 11 19195675 19200598 Lan20g0911 20 8686619 8692630 LSH
Lan20g0911 20 8686619 8692630 Lan4g1174 4 18813187 18818219 LSH