Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0909 ATGGAAGCAACAGAGGAAGTCTCTTTGGGTGGGTCCAAAGAGCAAATCAACATTGTTAAAGGGAAAAGAACCAAAAGGGTAAGGCCACAATCCCCTATTCCCTTCTCCATCACTGCTATTTCTTCCACTGGAGAAAAAGAACATTACAACAATGTTCATGACAACAACAACAACAACATCAAAGATGATAACAACAACAATAATAATAATACCACTCCCACCACTTCTTATGCAGGGTTACAAGACAGCACTACTGAGGAAGAAGAGGACATGGCAAATTGTCTGATCCTTCTAGCACAAGGACAAGCCCGGGAATCTCCGAAACATGCTGCGGCCGGTGGTGGTGAAGACTTGACCGGAGACATGAGCTATAGTAAGTACAGCAGTAGAAAATTCATGGAAGCAGCTGGTATAGGGTCAGGAAGGGCAGGGTATTATGTATATGAATGCAAGACGTGTAGTAGAACTTTCCCTTCATTTCAAGCACTTGGAGGCCATAGGGTTAGTCACAAAAAACCAAAGGCCATGGCTGCTACAATTGCCATTAATGGGACTCAAGAGAAAAAACAACAACTTTTTTTGTCATCAGATGAGGAAGAGTTTCAATTCAAGACCAATAATAATAGACCAAATTCTCTTCAATTGAATAGCAGAGGCAATTCTTACAGCAATAACAAATCTAAGGTTCATGAGTGCTCCATTTGTGGTGCTGAATTCAAATCAGGACAGGCATTGGGTGGCCATATGAGACGGCATCGCGCACCGGTTGGGACTAATACAACACTCTCTTTGGCACCAATAGCTTTGGAACCTGAAGAAGATCAACAACCTAGAAAAAGAAGGAATATTTTGTCTTTGGATTTGGATCTTAACCTTCCTGCACCAGAACCAGAAGATGATCCCAGAGAACCCAAGTTTCCCTTTGCATCCAAACAACAACAACAAGGAAAAACACAACAACAGCAACAACAACAACAACAATCTAATCTTTCCTTCTCCACCCCAGCTTTGGTGGATTGTCAATATTAA 1029 0.4179 MEATEEVSLGGSKEQINIVKGKRTKRVRPQSPIPFSITAISSTGEKEHYNNVHDNNNNNIKDDNNNNNNNTTPTTSYAGLQDSTTEEEEDMANCLILLAQGQARESPKHAAAGGGEDLTGDMSYSKYSSRKFMEAAGIGSGRAGYYVYECKTCSRTFPSFQALGGHRVSHKKPKAMAATIAINGTQEKKQQLFLSSDEEEFQFKTNNNRPNSLQLNSRGNSYSNNKSKVHECSICGAEFKSGQALGGHMRRHRAPVGTNTTLSLAPIALEPEEDQQPRKRRNILSLDLDLNLPAPEPEDDPREPKFPFASKQQQQGKTQQQQQQQQQSNLSFSTPALVDCQY* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0909 342 MobiDBLite consensus disorder prediction 53 82 - -
Lan20g0909 342 MobiDBLite consensus disorder prediction 198 222 - -
Lan20g0909 342 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Lan20g0909 342 Gene3D Classic Zinc Finger 146 252 - -
Lan20g0909 342 MobiDBLite consensus disorder prediction 288 342 - -
Lan20g0909 342 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 342 - -
Lan20g0909 342 MobiDBLite consensus disorder prediction 41 85 - -
Lan20g0909 342 MobiDBLite consensus disorder prediction 308 342 - -
Lan20g0909 342 ProSitePatterns Zinc finger C2H2 type domain signature. 232 252 IPR013087 -
Lan20g0909 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 252 IPR013087 -
Lan20g0909 342 SMART c2h2final6 148 170 IPR013087 -
Lan20g0909 342 SMART c2h2final6 230 252 IPR013087 -
Lan20g0909 342 PANTHER ZINC FINGER PROTEIN ZAT5 12 342 - -
Lan20g0909 342 Pfam C2H2-type zinc finger 147 173 - -
Lan20g0909 342 Pfam C2H2-type zinc finger 229 255 - -
Lan20g0909 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 175 IPR013087 -
Lan20g0909 342 SUPERFAMILY beta-beta-alpha zinc fingers 147 252 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0909 Lan-Chr20 8658943 8660412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0909 1 342 C2H2 Transcription Factor Family AT5G04390 42.670 7.38e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan20g0909 zf-C2H2_6 4.5e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0909 - - gmx:100799383 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1301 11 19190005 19191620 Lan20g0909 20 8658943 8660412 LSH
Lan20g0909 20 8658943 8660412 Lan4g1180 4 18895441 18897011 LSH