Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0900 ATGAGCAACACTTTTGATTCTGATAGCCCTTCAGAGGAATCAAACCTATCATATTATACTATTGGATTATCTGTTGGTTTTCTCTTCATCATAATGTTCATATCTGTCACTTCATATTACTGTACCCATAGAAACTTTCAGAACAGGATATCTACAAGAGCCAGTGCCAGTGCCAGCAACTACGGTTCTAATAGAACTGTGATCATGGAGAGAGATATTTCTGTTGTAACTATCCAAGTCCAAAGTGAGGAAGAAAAAGAAGCCATTTTTAAAAGTTATCCTCAAATGTTGTACTCTCAAGCCAAGCTTCACAAGGTTGAACATTCTTCAACAACACTAGGTTGCTCAATATGTTTAGCAGATTATAATGATTCGGAGTGGTTGAGGTTCTTGCCAGATTGTGGTCACTATTTTCATAAGGAATGCATTGACATGTGGTTGAGGCTAAACATGTCTTGTCCAGTTTGTAGAAACTCTCCATTCCCAACACCTCTTCCAACTCCCATTGCTCAAGTTACTCCATTGGCTACAAGACGAGATTGA 543 0.3849 MSNTFDSDSPSEESNLSYYTIGLSVGFLFIIMFISVTSYYCTHRNFQNRISTRASASASNYGSNRTVIMERDISVVTIQVQSEEEKEAIFKSYPQMLYSQAKLHKVEHSSTTLGCSICLADYNDSEWLRFLPDCGHYFHKECIDMWLRLNMSCPVCRNSPFPTPLPTPIAQVTPLATRRD* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0900 180 Pfam Ring finger domain 115 157 IPR001841 -
Lan20g0900 180 PANTHER RING-H2 FINGER PROTEIN ATL71-RELATED 14 179 - -
Lan20g0900 180 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 179 IPR045899 -
Lan20g0900 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 161 IPR013083 -
Lan20g0900 180 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lan20g0900 180 SUPERFAMILY RING/U-box 114 163 - -
Lan20g0900 180 SMART ring_2 115 156 IPR001841 -
Lan20g0900 180 CDD RING-H2_PA-TM-RING 115 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0900 Lan-Chr20 8546276 8546818 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0900 19 178 C3H Transcription Factor Family AT5G06490 41.071 3.81e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0900 - - adu:107466513 199.134