Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0899 ATGAACAACAACGTGGAAAATGGTTTTGATGCAAGTGGGTTCACATATGGTGTAGCATTCGTGGTTGGTTTAATCTTCACAATTTTAGTAATAGCTTTTGCATGTGTGCGCTTTCGTATGTCTCAAAACCCTAATATACTCAACGTCTTGGCTGGTTTTCCACCTTCTCATAGAGGAGAAAACTTAGTTGAGATGGAACAAGGTCTTCATCAACATCACATTGAAACAAGTTTTGAAAGCTTCCCTAAACTACTCTACTCTGAAGTGGTGCAGAATAAAGGTGGTTCAAATATTTATTCTAGTTGTTCTATTTGCTTAGGGGATTTCAAAGAAAGTGACATGTTAACGTTGCTTCCTGGTTGTGGCCATCTCTACCACCTTAATTGTGTTAATCCATGGCTAAGGTTACATTCAACTTGTCCCATATGTCGAAAATCATCTGGTCAAAATCAAAATTCAATTGCCTCTAATATTGGGGGGTAA 483 0.3789 MNNNVENGFDASGFTYGVAFVVGLIFTILVIAFACVRFRMSQNPNILNVLAGFPPSHRGENLVEMEQGLHQHHIETSFESFPKLLYSEVVQNKGGSNIYSSCSICLGDFKESDMLTLLPGCGHLYHLNCVNPWLRLHSTCPICRKSSGQNQNSIASNIGG* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0899 160 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Lan20g0899 160 Pfam Ring finger domain 101 144 IPR001841 -
Lan20g0899 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 151 IPR045899 -
Lan20g0899 160 CDD RING-H2_PA-TM-RING 102 144 - -
Lan20g0899 160 SUPERFAMILY RING/U-box 80 149 - -
Lan20g0899 160 SMART ring_2 102 143 IPR001841 -
Lan20g0899 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 148 IPR013083 -
Lan20g0899 160 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0899 Lan-Chr20 8538425 8538907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0899 13 146 C3H Transcription Factor Family AT5G06490 35.526 5.95e-25 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0899 - - gmx:102663718 194.897