Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0894 ATGGTTTTAAAATGGAGGTTTAACTTTTCTGCTGTTTTAGTTGGTCAACATGCATGCACATTCATGGCAGGAAAATTCATATTCACAATGGATCAGAAGGATATAACTAGATTCTTAACCAAAACGATAGATAGTTTCATTCAGGATCGGTTAATCAACAAAGAGCAAAGAATCGAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTAAAGATGGAAGTTCTGACAAAGACACTGAGGTGGAGTACTCTGATCAAGCAGTAATAGCAAATCTGGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAGTACCTACAATATGGAAACCAAGCTTGCTCGGCTTGATCACGCTGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAAACTGCTGGAGTTCCAAACTTCTATCTCTCAGCTTGGGCACACCTAAATCTATCCTACTTATGGAAGTTGAGGAGCAATACACAAAATTGTATTTTTCATGCTCTTGAGATGTTCATAGTTGATCCTTTTTTCTCTCGGGTTGATTTCGCTCCTGATCTATGGAAAACTCTGTTTCTTCCCCACATGAGCTCCATTGTAGGGTGGTATTCCGAGGAAAGACACAAACTTATGATGGAAGTGGTATCTGGCTCTGCTAATTTGTCCTTTACAGCTGACTTAGATCAAGTTTTCAATGAGTCTTTGGTATCGTCCATGAGGCCACACCAACTAGATAAATTGCAAAAGCTGGACCAGCTTTATGGAGAATCATTGAATGAGAACACAAGGCTATATGCAAAGTACTATAAGGATTGCATGAACTCTGATTCCACCTCAGGTAAGAAGGTTTCTATGTTGCCAATTGCTGAGCCCCCAATGACTCCTTTACATGAGTTGAGCCTATCTATTCCCGATTACATAAAATTTGGTCCGATTTTGCCCAAGAGTGCTGGCTTTTCTTCGACATCAATTCCTAAAGATATTGTAAATGAAAGTTTCAACAGAGAGAATTCAGCTTCCAGCCATTCAAAGAAGGCAGAGAAATCATCTACGTTGGGTGCTAAGGAGAACATCATTGAAGAGAATGAAAATTATTCAGAATCTGAGCTTGATGGTGTATCTGTGGATTCTGATAACAAAAATAATATTTTCTCACCTGAAAAGAAGATGATCAAGGATGAGTATATGGAACCAAATTCATCAAACCAGAAGAATCAAATATATTCTCCTAATCTCTCTCCCTTGGATTCCCGAAGAACTTCTCTCGATAATTCATCTACAAATCCTGACTTAAGTAGTAAAAGAGAACCCAAGATTTTGCGCTCGCTGTCTAGTCGTTTTCGGGATTCAGCTATTTCTGATTTAACTTTATCTCCAGACATGAGCTCTGATCACATTTTCAACTCTGACAATGATGTGATGGTCTTCAGGAACAATCAGCGGAAAAACTATAACCATACACCAAGTATGAATCATGACAATGATAATAGCCTAATACTAAATGACAGCTCCATTTGTGAAAGTGATGACGGATATCAGGGCTGCATTTCATTGCCAAAATTAGAGAAGCCGACTAGTGGATCAAAACCACCGAAAGATTTTGTTTGTGCGATAACAGGTCAGATATTTTGCGATCCTGTCACCCTTGAAACAGGCCAGACGTATGAAAGAAAAGCAATTCAAGAGTGGCTCAGAACAGGAAACACAACATGCCCCATCACACGACAGCCTCTATCTGCTAGTGCATTACCCAAAACAAACTATGTTTTGAAGAGATTGATAACATCATGGAAAGAAAAGCATCCTGAACTAGCTCAGGAATTATCAAATGCTGACACACCAAGGAGTTCTTCTTTATCTCCCTTCGCAAAAGACATCCCGATGCACTCCATTATAGGTACAGAAGATTCACCACATCAAAAGAACAAAGGAGACTGTAATAAACAAAAAAGCAAAAGATTTATGCAGTTTGTTGTCTCAACATCTCCAACCAGTGTTCTGTCTCAAGCTGCAGTTGAAACAATCATGAATTGCTTAAAACCTTACATTTCAACTCTATGTACATCAGAAAACTTGCAAGAATGTGAAAAAGCTGTAATGGAAATGGCCAAATTATGGAAGGATTCAAAGACTGATTCTCAGATTCTTTCTTATTTATCAAAGCCAACTATCATAAATAGTTTAGTGGAAATACTTTCAGCTTCAATGAGTAGAGAAGTTCTGAGAACATCAATTTATATTCTCTCCGATCTAATTTCTGCTGATGAAAGTGTTGGAGAAACACTTCATAATCTGGATTCCGATTTCGATTGCATGACTACTCTACTTAAGAATGGGTTGGCTGAGGCTGCCATACTAATTTACCAACTGAGACCAGTTTACTCTCAGCTCTCATCACATGAACTTATACCCTCCCTTGTCAAGGTGATCCAGGACAAAAATGAGGACTTGAATGATTTTCATTTAGCTTTGGGGCCCAAAGATGCTGCTATAGCAATTCTTGAGCAAATTTTGATAGGAGGGGATGAAAATAGAAGATCTCTTAATGCTTTGAATATCATTTCCGCAAATGGAATTCCAGCACTACTGAAGTATTTGGAGAAGATGGAAGGACGGAGGGCTATTATTTACGTACTTCTATGTTGTATGCAAGCTGAAAAAGGTTGCAAGAGCTCGATAGCAAGCGGAATTGAATTGTCTCCAGTTCTTGAATTATTTCATGCCGGAAATGATAGTGTGAGAGGCATATGTGTGGAGTTTCTCGCGGAACTGGTTCAATTGAATAGAAGGACATTCAGCAACCAGATATTACAGATAATCAAGGATGAAGGAACATTTAGTACGATGCATACATTTCTCGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCAGTTGCCAGTCTTCTTCTTCAGCTTGATCTTCTGGTTGAGCCGCGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAAACATTGATTGAAGCACTTTGGCAAAAAGATTTCTCCAAAAATCAAATAAAGGCTTTAGATTCTTTACTATTTCTTATTGGATATGTCACTTCCTCGGGAAAGTCATATGCCGAAGCTTGGTTGCTCAAGATTGCTGGATTTGATCAACCTTATAATGCTTTAATGGAGGCCGGGCAGTTGGGGGAATTTGACAATGATATGATCGAAACAATGGAGGATGAAAAGAAGGCTCTGAACTCTTGGCAGAAAGGGATAGCTTTTGTACTTTGTAACCATGAAAACGGTTCGATATTTAAAGCTTTAGAAGAATGCTTAAGGAGTAATTCCGTAAATATAGTAAAATCTTGCCTTGTTCTTGCCACATGGTTGACACACATGCTCTCTACTCTTCCCGAAACCGGTATAAGGGAAGTTGCTCGCAAATCCTTGCTTCATGCACTTATAAATGTCCTCCACTCATCCAAGAACTTGGAGGAAGTAATACTGGCTACCCTATCTTTGAAGGCTTTCCTTAATGATCCATTTGCTCATGAAGCACTTGGAGTTTATGCTAAAAGCATCTATAGAACCTTGAGGAAGCTGAGGAAATATTCAGTGGTGGCAGTTGATATTATGAAGGTCTTACTAAACTTAAAATCTGTTGATATGACAGAGTTGTGGAGTTGTAAAGAAGTTGTTGAGTTAGATTTGAGCTCAAATGGAGAGGTTCTTTCTTTGCTTTATCTGAATGGTCAAGTCTTAAGTGGACACTCTGATGGAACAATCAAGTTATGGGATTCAAGGAAGAGAGTGCCAAGAATAATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATCTCTCTGTTCTTCCGGTGATAGACTATACAGTGGCTCCTTAGACAAAACCATCCGGGTTTGGATGATTAAACCTGATGAAATTATATGTATTGATGTTCATGACGTTAAAGAGGCAGTGTATGTGTTGACAGCTAATGCTAAATTGGCATGCTATGTATCTCAAGGAACTGGAGTTAAGGTTTATAATTGGTCAGATACTCCAAAGCTCATCAATTTCAACAAATATGTGAAATGCCTTGCCATTGCTGGGGACAAATTATATTGTGGATGTTCTGGATACAGCATCCAGGAGGTTCACTTGTCAAATTATACATCAATTTCATTCTTCTCTGGCACAAGAAAATTGTTGGGAAAACAAACCATACATTCCCTTCAAATTCATGACGGTTTCCTCTTTGCTTGTGGCTCTTCTGTTGATTCAACTGCAGGAAAGGTATTTTCACTCTCCACAAAAATGGTGGTAGGATCACTCTTGACTGGATTTGACATCCATCGTGTAGCGATAAACAGTGACTTCATATTTGCTGGTACAAAATATGGGACCATTGAAGTTTGGCTGAAAGATAAGTTAACCCAAGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATCACATCACTAGTATCAGATGCTGATGGTATGATGCTTTATGTTGGTTCTTCTGATGGCAAAATCCAGGTTTGGGCTTTGGATTAA 4512 0.3894 MVLKWRFNFSAVLVGQHACTFMAGKFIFTMDQKDITRFLTKTIDSFIQDRLINKEQRIEHKEQCAERLAAKDGSSDKDTEVEYSDQAVIANLDWGIEALEEAISTYNMETKLARLDHAEKMLQVCAMLNPKQKTAGVPNFYLSAWAHLNLSYLWKLRSNTQNCIFHALEMFIVDPFFSRVDFAPDLWKTLFLPHMSSIVGWYSEERHKLMMEVVSGSANLSFTADLDQVFNESLVSSMRPHQLDKLQKLDQLYGESLNENTRLYAKYYKDCMNSDSTSGKKVSMLPIAEPPMTPLHELSLSIPDYIKFGPILPKSAGFSSTSIPKDIVNESFNRENSASSHSKKAEKSSTLGAKENIIEENENYSESELDGVSVDSDNKNNIFSPEKKMIKDEYMEPNSSNQKNQIYSPNLSPLDSRRTSLDNSSTNPDLSSKREPKILRSLSSRFRDSAISDLTLSPDMSSDHIFNSDNDVMVFRNNQRKNYNHTPSMNHDNDNSLILNDSSICESDDGYQGCISLPKLEKPTSGSKPPKDFVCAITGQIFCDPVTLETGQTYERKAIQEWLRTGNTTCPITRQPLSASALPKTNYVLKRLITSWKEKHPELAQELSNADTPRSSSLSPFAKDIPMHSIIGTEDSPHQKNKGDCNKQKSKRFMQFVVSTSPTSVLSQAAVETIMNCLKPYISTLCTSENLQECEKAVMEMAKLWKDSKTDSQILSYLSKPTIINSLVEILSASMSREVLRTSIYILSDLISADESVGETLHNLDSDFDCMTTLLKNGLAEAAILIYQLRPVYSQLSSHELIPSLVKVIQDKNEDLNDFHLALGPKDAAIAILEQILIGGDENRRSLNALNIISANGIPALLKYLEKMEGRRAIIYVLLCCMQAEKGCKSSIASGIELSPVLELFHAGNDSVRGICVEFLAELVQLNRRTFSNQILQIIKDEGTFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSKNQIKALDSLLFLIGYVTSSGKSYAEAWLLKIAGFDQPYNALMEAGQLGEFDNDMIETMEDEKKALNSWQKGIAFVLCNHENGSIFKALEECLRSNSVNIVKSCLVLATWLTHMLSTLPETGIREVARKSLLHALINVLHSSKNLEEVILATLSLKAFLNDPFAHEALGVYAKSIYRTLRKLRKYSVVAVDIMKVLLNLKSVDMTELWSCKEVVELDLSSNGEVLSLLYLNGQVLSGHSDGTIKLWDSRKRVPRIIQETHEHTKAVTSLCSSGDRLYSGSLDKTIRVWMIKPDEIICIDVHDVKEAVYVLTANAKLACYVSQGTGVKVYNWSDTPKLINFNKYVKCLAIAGDKLYCGCSGYSIQEVHLSNYTSISFFSGTRKLLGKQTIHSLQIHDGFLFACGSSVDSTAGKVFSLSTKMVVGSLLTGFDIHRVAINSDFIFAGTKYGTIEVWLKDKLTQVASIKMAGGHTKITSLVSDADGMMLYVGSSDGKIQVWALD* 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0894 1503 SUPERFAMILY ARM repeat 667 1164 IPR016024 -
Lan20g0894 1503 MobiDBLite consensus disorder prediction 332 436 - -
Lan20g0894 1503 Gene3D - 1206 1387 IPR015943 GO:0005515
Lan20g0894 1503 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 1503 - -
Lan20g0894 1503 MobiDBLite consensus disorder prediction 395 432 - -
Lan20g0894 1503 CDD RING-Ubox_PUB 533 575 IPR045210 -
Lan20g0894 1503 ProSiteProfiles Trp-Asp (WD) repeats profile. 1237 1250 IPR001680 GO:0005515
Lan20g0894 1503 ProSiteProfiles U-box domain profile. 528 603 IPR003613 GO:0004842|GO:0016567
Lan20g0894 1503 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 22 1503 - -
Lan20g0894 1503 Pfam U-box domain 530 600 IPR003613 GO:0004842|GO:0016567
Lan20g0894 1503 Gene3D - 679 956 IPR011989 -
Lan20g0894 1503 ProSiteProfiles Trp-Asp (WD) repeats profile. 1262 1291 IPR001680 GO:0005515
Lan20g0894 1503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1469 1503 - -
Lan20g0894 1503 ProSiteProfiles Trp-Asp (WD) repeats profile. 1469 1503 IPR001680 GO:0005515
Lan20g0894 1503 SUPERFAMILY RING/U-box 528 601 - -
Lan20g0894 1503 Pfam WD domain, G-beta repeat 1235 1250 IPR001680 GO:0005515
Lan20g0894 1503 Pfam WD domain, G-beta repeat 1263 1291 IPR001680 GO:0005515
Lan20g0894 1503 Pfam WD domain, G-beta repeat 1471 1500 IPR001680 GO:0005515
Lan20g0894 1503 SMART Ubox_2 532 596 IPR003613 GO:0004842|GO:0016567
Lan20g0894 1503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 519 611 IPR013083 -
Lan20g0894 1503 Gene3D - 1388 1503 IPR015943 GO:0005515
Lan20g0894 1503 SUPERFAMILY WD40 repeat-like 1235 1502 IPR036322 GO:0005515
Lan20g0894 1503 SMART WD40_4 1255 1292 IPR001680 GO:0005515
Lan20g0894 1503 SMART WD40_4 1460 1501 IPR001680 GO:0005515
Lan20g0894 1503 SMART WD40_4 1212 1250 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0894 Lan-Chr20 8500803 8509652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0894 530 886 U-box Gene Family AT1G23030 27.273 3.27e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0894 - - lang:109336328 2939.83