Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0886 ATGGAGGATACATTTCCCAAGATGGAAATCTTCTATCAAAAGGAATTACCAACTTGTTTCCAAGAAATGGCAACAACAGAATCAAAGTTTTCGGAGGATGCAACTATAAGAAATTCTCACTCTTTCACTGCTTCTAAACAGGTTCATGTGCTAACATGTGGGGTAAACTCATCAATACCATCATTCCCTGAAAAGCTCATTTCATCAACAGATTCTACTTCAATGAAAGAAGTGGCACCTTTTACCACTTTCATTACTCATATCCCTACAAAGTTCTCTGATCATGAAGACATCAGTAATATGCAACAGAAAAACCAATCCATTTCTGGATTCAATTCTATCTGCACCCCTATTGTCACAACCTCAGATACAACAAGTCATAGCTCCATCCCTCTCAACCTTTTGGAAACTCTTCCAGCATTAACCAAAGCACCAATCTCTAATGAGAAACTGGTTCCTCCAAAATTTCCAAATTTGGGTTTGTTTTTGCAGGAACCTTCCAAGGTTTACTCAACTTCCTCACACATCAAAAGTGGTCATGATGGCATGTCAGAAACTTCAGACCCTTCATTTCATTACTCCAATTTTGACCAAACACACCCTCAAGCAATGAATAAGACTATTCCAACAAATCTAAGGTCCAATTCTTTCAATGAAAATTGGTTAAGAGCCACAAAGAATCAACCTTTGAAGTGTAGTGGTGGAAGAAGGAAGCTATATAAAGGTGTTAGGCAAAGACAATGGGGGAAATGGGTAGCAGAGATAAGATTACCAAGAAATAGGAAAAGGGTATGGTTAGGAACATTTGACACAGCTGAAGAAGCTGCATTTGCATATGATACAGCAGCATATATTCTAAGAGGAGAATATGCTCAGCTGAATTTCCCAGATATGAAGCATGTGATTCAAGCAAATTCTTTGAATGGAACTACTGCTGCACTTGTTGAAGCAAAACTACAAGCAATATCAGTACAAAGTGGTTCTTCTAATAGGAAGATCACTGATTCATCAGAAGCAGGGTCATCTATAATTGATGAGAATGGCAAATTGAAAAGTAGAAAAGGTAAGGATTCAATTTCAACATTGAATGAGTGGGAGTTTGGTGCTGAGAGAAGTGAGAGAATCAAAAGTACCCATGTTGAGATATCAGATATTGAAGCTGTTCAGTTAAGCAGAATGCCATCCTTGGACATGGATATCATTTGGGATGCACTATTAGTCTCTGATTCAGGACCAATTTAA 1242 0.3792 MEDTFPKMEIFYQKELPTCFQEMATTESKFSEDATIRNSHSFTASKQVHVLTCGVNSSIPSFPEKLISSTDSTSMKEVAPFTTFITHIPTKFSDHEDISNMQQKNQSISGFNSICTPIVTTSDTTSHSSIPLNLLETLPALTKAPISNEKLVPPKFPNLGLFLQEPSKVYSTSSHIKSGHDGMSETSDPSFHYSNFDQTHPQAMNKTIPTNLRSNSFNENWLRATKNQPLKCSGGRRKLYKGVRQRQWGKWVAEIRLPRNRKRVWLGTFDTAEEAAFAYDTAAYILRGEYAQLNFPDMKHVIQANSLNGTTAALVEAKLQAISVQSGSSNRKITDSSEAGSSIIDENGKLKSRKGKDSISTLNEWEFGAERSERIKSTHVEISDIEAVQLSRMPSLDMDIIWDALLVSDSGPI* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0886 413 SMART rav1_2 239 302 IPR001471 GO:0003700|GO:0006355
Lan20g0886 413 Pfam AP2 domain 240 288 IPR001471 GO:0003700|GO:0006355
Lan20g0886 413 ProSiteProfiles AP2/ERF domain profile. 239 296 IPR001471 GO:0003700|GO:0006355
Lan20g0886 413 Gene3D AP2/ERF domain 239 297 IPR036955 GO:0003700|GO:0006355
Lan20g0886 413 PRINTS Ethylene responsive element binding protein signature 240 251 IPR001471 GO:0003700|GO:0006355
Lan20g0886 413 PRINTS Ethylene responsive element binding protein signature 262 278 IPR001471 GO:0003700|GO:0006355
Lan20g0886 413 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 409 - -
Lan20g0886 413 CDD AP2 238 297 IPR001471 GO:0003700|GO:0006355
Lan20g0886 413 SUPERFAMILY DNA-binding domain 239 297 IPR016177 GO:0003677
Lan20g0886 413 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF062 9 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0886 Lan-Chr20 8380732 8382259 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0886 128 405 AP2-EREBP Transcription Factor Family AT4G13620 42.857 2.52e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan20g0886 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0886 - - lang:109341783 508.449