Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0881 ATGGAACAAGAAGAGCACGAAGTGTACGGCGCAGACATTCCCGACGAGGTCGACATGGATGAACAAGAAGAACAACAACAGCAGCAGCAACAACAACAACAACACAATCCCGCAACTAACCCTAACAAGGAATTAGGTGACATGAAGAAGAGGCTGAAGGAGATCGAAGATGAAGCTGCGGCGCTTCGTGAGTTGCAGGCCAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGAAGATCCAGCTGGTTCTTCAGCAACGCTAGCTGAAAAGGAGGAAGTGGATGCTAGATCTATCTATGTTGGTAATGTTGATTATGCATGTACACCTGAAGAAGTCCAACAACATTTTCAGTCATGTGGAACAGTTAACAGAGTCACAATATTGACAGACAAATTTGGTCAGCCAAAAGGATTTGCGTACGTAGAGTTTGTTGAAGTTGATGCTGTTCAGAATGCTGTCATGTTGAACGAATCAGAATTGCATGGACGACAACTTAAGGTGTCTGCTAAGCGCACAAATGTCCCTGGAATGAAACAGTATTATGGAAGACGTCCTATGGGTTTCCGAGGTAGAAGGCCTTTCATGCCATCTCCATTCTATCCGCCAGCTGGTTTTGGAAGGGTTCCAAGGTTTAGACGACCCACAAGATACAGGCCATACTAG 663 0.457 MEQEEHEVYGADIPDEVDMDEQEEQQQQQQQQQQHNPATNPNKELGDMKKRLKEIEDEAAALRELQAKVEKEMGAVQEDPAGSSATLAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNAVMLNESELHGRQLKVSAKRTNVPGMKQYYGRRPMGFRGRRPFMPSPFYPPAGFGRVPRFRRPTRYRPY* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0881 220 Coils Coil 45 75 - -
Lan20g0881 220 CDD RRM_II_PABPs 97 168 - -
Lan20g0881 220 MobiDBLite consensus disorder prediction 1 52 - -
Lan20g0881 220 SMART rrm1_1 97 168 IPR000504 GO:0003723
Lan20g0881 220 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Lan20g0881 220 MobiDBLite consensus disorder prediction 24 41 - -
Lan20g0881 220 Gene3D - 11 178 IPR012677 -
Lan20g0881 220 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 172 IPR000504 GO:0003723
Lan20g0881 220 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 219 - -
Lan20g0881 220 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 219 - -
Lan20g0881 220 SUPERFAMILY RNA-binding domain, RBD 87 195 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0881 Lan-Chr20 8334111 8338724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0881 97 168 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 7.35e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0881 K14396 - gmx:100527545 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0881 20 8334111 8338724 Lan4g1214 4 19954477 19960837 LSH