Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0879 ATGTTTAGGGAAGTTATGGAAGGGAAAATGGGTTGGGGAATAATAGAAGAGGAAGGTTGGAGAAAGGGACCTTGGATTGCTGAAGAGGACAAATTGCTGATTCAGTATGTAGAGGAACATGGTGAGGGAAGATGGAACTCTGTTGCTAGGATTGCAGGACTGAAAAGAAATGGGAAAAGTTGCAGATTGAGATGGGTGAATTACCTAAGACCAGACCTAAAGAGGGGTCAGATAACACCACAAGAAGAGAGCATAATTATAGAGCTACATGCTTTGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTGCCAGGAAGAACAGACAACGAGATAAAAAATTATTGGAGAACTCATTTCAAGAAAAAGACAAAAACTCCCTCTGATGCTGCCGAAAAGGCGAAAACTCGCCTCTTGAAGAGGCAGCAATTTCAGCAGCTTCAGCAACAGCAACAGTTGAAGCAGCATCAGCTTCAACAACAACAACTGCAATTTAACTTAGACATGAAAAACATCATGAACATGTTTGAGGAAAATGTCCATATGGTACCTTCTACATCTGAAGAGACACAAGAAATACTCAACAATATATACCCAAACACAACACCATATGAGGAAGGCTATTTCTACTCTATGCTCAATGGCAATGCATCTGCACCAACCTCGTCAAATGAAGAAACTTTGTGGGATGGGCTATGGAACTTCGATGATGTTCTTTACAATTTTAGTGCAGCTAGTGTTCCAAGCAAAGCTAGTATGCACAATTTAGTTGCACCCTTTTGTTAA 786 0.4084 MFREVMEGKMGWGIIEEEGWRKGPWIAEEDKLLIQYVEEHGEGRWNSVARIAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIIIELHALWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKTPSDAAEKAKTRLLKRQQFQQLQQQQQLKQHQLQQQQLQFNLDMKNIMNMFEENVHMVPSTSEETQEILNNIYPNTTPYEEGYFYSMLNGNASAPTSSNEETLWDGLWNFDDVLYNFSAASVPSKASMHNLVAPFC* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0879 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 69 IPR017930 -
Lan20g0879 261 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 254 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan20g0879 261 PANTHER MYB TRANSCRIPTION FACTOR 1 254 - -
Lan20g0879 261 CDD SANT 24 69 IPR001005 -
Lan20g0879 261 Gene3D - 79 123 - -
Lan20g0879 261 Gene3D - 22 74 - -
Lan20g0879 261 SMART sant 74 122 IPR001005 -
Lan20g0879 261 SMART sant 21 71 IPR001005 -
Lan20g0879 261 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Lan20g0879 261 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Lan20g0879 261 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Lan20g0879 261 Coils Coil 144 164 - -
Lan20g0879 261 CDD SANT 79 120 IPR001005 -
Lan20g0879 261 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Lan20g0879 261 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Lan20g0879 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0879 Lan-Chr20 8320959 8322306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0879 17 261 MYB Transcription Factor Family AT3G24310 58.077 6.59e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0879 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0879 K09422 - gmx:100782089 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1255 11 18460770 18462261 Lan20g0879 20 8320959 8322306 LSH