Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0863 ATGACCAAAGGCCGCACGGACCTCGCAATCAACGAAACTAGTAGCGATGGCAACAATCGGAGTCTCGAAGACGAAGACAACAATGGAGAATATCAAGAACCAAAACAGGGTGCAGTTGAGGTTGGAAACCGCAGACCAAGAGGGAGGCCAGCTGGATCAAAGAACAAACAAAAACCACCAATCTTTGTAACAAGGGATAGCCCAAATGCCCTAAAAAGCCATATTATGGAAATAGCTGCGGGTGCTGATGTTGCTGAATGTGTAGCAAAATTTGCAAGGAGGCGCCAGTGTGGGGTATGTGTCCTTAGTGGTAGTGGCTCTGTGGCTAATGTCACCCTTAAACAACCATCTGCTCCTGGTGGTGCTGTTGCATTTCATGGCAGGTTTGATATCCAAACCTTAACTGGTGCTTTCTTACCTGGACCTTCCCCTCTAGGATGCACCGGACTCACGGTGTACCTTAATGGAGGGCAAGGTCAGGTTTTGGGAGGGTGTGTTGTTGGGTCTTTAGTTGCTGCTGGACCTGTTATAGTTATTGCTGCAACTTTCTCTAATGCAACTTATGAGAGATTGCCGCTTGATGATAATGATGATGAGGGGCCTAGTAGTGCTGCGGCCGCGGCCGCAGCATCAGCCTCACATGAAGGTGGCACCGGTGGATCATCGCCACCTTGGCCGCTGGGAATTGGAATCATGGGTGGAGGTCAGTTGCAACAAGGTGGGATTCCAGATCCTTCAATGTCTCTTCCCTTGTATAACCTTCCACCAAATCTGTTGCACAATGGAGGGCAAATAGGGAATGAAACATTTAATGCTTGGGCTGGAAGGACACCTTACTAA 840 0.4881 MTKGRTDLAINETSSDGNNRSLEDEDNNGEYQEPKQGAVEVGNRRPRGRPAGSKNKQKPPIFVTRDSPNALKSHIMEIAAGADVAECVAKFARRRQCGVCVLSGSGSVANVTLKQPSAPGGAVAFHGRFDIQTLTGAFLPGPSPLGCTGLTVYLNGGQGQVLGGCVVGSLVAAGPVIVIAATFSNATYERLPLDDNDDEGPSSAAAAAAASASHEGGTGGSSPPWPLGIGIMGGGQLQQGGIPDPSMSLPLYNLPPNLLHNGGQIGNETFNAWAGRTPY* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0863 279 Gene3D - 72 198 - -
Lan20g0863 279 ProSiteProfiles PPC domain profile profile. 68 205 IPR005175 -
Lan20g0863 279 CDD DUF296 72 183 IPR005175 -
Lan20g0863 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 185 IPR005175 -
Lan20g0863 279 MobiDBLite consensus disorder prediction 1 64 - -
Lan20g0863 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 195 - -
Lan20g0863 279 MobiDBLite consensus disorder prediction 1 17 - -
Lan20g0863 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 276 IPR014476 GO:0003680
Lan20g0863 279 MobiDBLite consensus disorder prediction 192 230 - -
Lan20g0863 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 14 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0863 Lan-Chr20 8110130 8112054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0863 1 279 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.448 5.49e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0863 - - lang:109335197 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1239 11 18211759 18215941 Lan20g0863 20 8110130 8112054 LSH
Lan20g0863 20 8110130 8112054 Lan4g1233 4 20208080 20209106 LSH