Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0857 ATGGATCTTGTAAGTAAAAGATACTTGATCTATGTGTCACAACATGGTTCATCATCACAAGCACTTTCTCCAATCACAATTCAAGGGAGTTCTTCAATCTTTCACCCAAATATGCATCATTCTAGGACAAGTTTCCCAATCATAGCAATTGTTATAATGGGAATATTGGCCACAGCTTTGTTGCTTGTAAGCTACTACATCTTTGTGATCAAGTGTTGCCTCAATTGGCACCACATTGATCTTCTAAGACGTTTCTCTTCATCATCGAGGCGCGAAGATCCATCGCCTATATACTCAAGGGTCATCGAACCTCGCGGATTAGACGAGGCAGTGATCAGATTAATCCCATTGATTCAATACAAAACACAACAAGAAGGAAGAACTAGTAGTATTAGTAGTAATGGAGAGTTTGGAGAAAGAAGCTTTTGTGAATGTGCTATTTGCTTGAATGAGTTTCAAGAAAATGAGAAGCTTAGGATTGTACCAAATTGCAGCCATGTGTTTCACATTGATTGCATAGATATTTGGCTTCAGAACAATGCAAATTGTCCACTTTGTAGAACAAGCATTTCTTTGACACACAGATTCCAAATTCAACAACTTCTCAGCATAAGGCCTTCTTTTTCTTCTCCTCAACATCAAAACTCTCACATTAGTGGTGATGAAGATTTTGTTGTGATTGAATTAGGCCATAATGATAATGATAGAGGCCAAAACAATGCTATGGAGTTACCAATAACATGTAATATTACAAGCCCTTCACCAAGGAAGTTATTGGAGCAGAGAAGTTTGAACAAGAAAGGAAGGAAGCTGCATAATAAAGTGACAAGCATGGGAGATGAGTGTATTGATATTAGAGCAAAGGATGAAGAATTTTCAGTGCAACCTATAAGGAGGTCTTTTTCAATGGACTCATCAGGGGACAAACTCTTCTATTTGGCAGTTCAAGAAGCATTGCAGAACATACAAGTCAATGAGGTCAATTCCATTGAGGAATGCAGTAGTAGTGGTAATAGTAGAGCCAAGAAATCATTCTTTTCCCTTGGACATGGAACTAGACTTAGAAGTTCTGTCCAACATGTCTTTTTGGACCATTGA 1098 0.3807 MDLVSKRYLIYVSQHGSSSQALSPITIQGSSSIFHPNMHHSRTSFPIIAIVIMGILATALLLVSYYIFVIKCCLNWHHIDLLRRFSSSSRREDPSPIYSRVIEPRGLDEAVIRLIPLIQYKTQQEGRTSSISSNGEFGERSFCECAICLNEFQENEKLRIVPNCSHVFHIDCIDIWLQNNANCPLCRTSISLTHRFQIQQLLSIRPSFSSPQHQNSHISGDEDFVVIELGHNDNDRGQNNAMELPITCNITSPSPRKLLEQRSLNKKGRKLHNKVTSMGDECIDIRAKDEEFSVQPIRRSFSMDSSGDKLFYLAVQEALQNIQVNEVNSIEECSSSGNSRAKKSFFSLGHGTRLRSSVQHVFLDH* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0857 365 CDD RING-H2_PA-TM-RING 144 187 - -
Lan20g0857 365 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Lan20g0857 365 Pfam Ring finger domain 144 187 IPR001841 -
Lan20g0857 365 SUPERFAMILY RING/U-box 144 193 - -
Lan20g0857 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 192 IPR013083 -
Lan20g0857 365 PANTHER RING-H2 FINGER PROTEIN ATL16 21 363 IPR044600 GO:0016567|GO:0016740
Lan20g0857 365 SMART ring_2 145 186 IPR001841 -
Lan20g0857 365 PANTHER RING-H2 FINGER PROTEIN ATL16 21 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0857 Lan-Chr20 8028436 8029666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0857 36 349 C3H Transcription Factor Family AT1G04360 48.246 1.61e-87 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0857 - - gmx:100794749 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1231 11 18117704 18119314 Lan20g0857 20 8028436 8029666 LSH
Lan20g0857 20 8028436 8029666 Lan4g1237 4 20266183 20267985 LSH