Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0856 ATGGACAAAGATGGATCCAAGGGAAGGGACAAAGATGACAGCAGAGATGTCCGGTACCGAGGCGTACGCTGCCGTCCATGGGGGAAGTTTGCGGCGGAGATTCGCGACTCGGCGAGGCAGGGTCAGAGGGTGTGGCTAGGAACATTCAACACAGCAGAGGAAGCAGCTAGAGCCTATGACAGAGCTGCTTATACCATGAGAGGTTCATTTGCTATTCTCAACTTCCCACATGAATATCCTATGTCAGGTGCAAGTGCTGGTAGTGGTGGTTCTCATTCCTCTGCTGCTTCATCCTCTTCTTCAAGGCATGGAAATGTGGAAGGAAGAGAAGTGTTTGAGATTGAGTACTACGATGATAAATTGTTGGAAGAGATGCTTGATTATGAAGAGAAGAAGAAGAAGGGACACTAA 411 0.4842 MDKDGSKGRDKDDSRDVRYRGVRCRPWGKFAAEIRDSARQGQRVWLGTFNTAEEAARAYDRAAYTMRGSFAILNFPHEYPMSGASAGSGGSHSSAASSSSSRHGNVEGREVFEIEYYDDKLLEEMLDYEEKKKKGH* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0856 136 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Lan20g0856 136 PANTHER DNA-BINDING DOMAIN 12 130 IPR044808 GO:0003700|GO:0009873
Lan20g0856 136 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Lan20g0856 136 MobiDBLite consensus disorder prediction 81 106 - -
Lan20g0856 136 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Lan20g0856 136 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Lan20g0856 136 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lan20g0856 136 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Lan20g0856 136 SUPERFAMILY DNA-binding domain 18 78 IPR016177 GO:0003677
Lan20g0856 136 PANTHER OS09G0571700 PROTEIN 12 130 - -
Lan20g0856 136 MobiDBLite consensus disorder prediction 86 105 - -
Lan20g0856 136 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0856 Lan-Chr20 8023191 8023843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0856 13 133 AP2-EREBP Transcription Factor Family AT3G23230 61.905 1.03e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan20g0856 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0856 - - gmx:100775830 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0856 20 8023191 8023843 Lan4g1238 4 20291345 20291948 LSH