Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0841 ATGGTAAAGATTTTCATTACACTCTTATTGTTTTCAGTTTTCTCAATAGCTTCATCAAGAATCACACCATCCTCCAACAGCAACATAGATTGGTGGTGCAATCTAACCCCACACCCTAAGCCATGCAAACATTACATTAGTCAAATCAACCACTTTTCTAATATCAAACACAAATCTGAGTTCAGGGCAATGCTTGTTAAATTAGTCTTGAAGCAAGTTGTTATCATGCAAAGTGAAGCACAAGATTTTGAACAAAACTTGGTGACTAAGAAGCATAAAGCAGTACATAATGATTGTTTGAAGCTCTATGAGAACACCATTTTTCATCTCAATCGTACCCTTGAAGGCCTGCATGTGAAGAAAACTTGTTCACCAGTTGATACACAAACTTGGCTCAGCACTACTCTTACAAATATCCAAACTTGTCAAACTGGGGCCACAGATCTCAGTGTTGAAGATTTCAAGGTGTCAAAATTGAGCAACAATGTTACTAAGATGATAAGGAACAGCTTAGCCATAAACATGGATTTCATGAAACAGAATGGAGATAATCACAAAGCAGAAACAAAAGAAGCATTTCCAAGTTGGTTTTCTAGGCATGACAGAAAGCTTTTGCAGTCTAAGTCTTCAATAAAGGCACATCTTGTTGTTGCAAAAGATGGTTCAGGACATTTCAAAACTGTCCAAGAAGCTCTCAATTCAGCATCAAATAGAAAAACAAAGAGAAGGTATATCATACATGTGAAAAAAGGTGTCTATGCAGAGAACATTGAGGTGAAGAAAAACAATGATAACATAATGCTTATTGGTGATGGAATGGCAAAGACTATAATAACAAGTCACTTAAGTGTTAAAGATGGATTCACTACTTATAGTTCAGCAACAGCAGGCATAGATGGCCTTCATTTCATAGCACGTGACATTACCTTCCAAAACACTGCTGGACCTCACAAGGGTCAAGCCGTGGCGCTCCGGTCGGCCTCTGATCTCTCTGTTTTTTATCGGTGCGCCATAGCAGGCTACCAAGACACCCTAATGGCTCATGCCCAACGTCAATTTTATAGGCAATGCTACATCTATGGCACAGTGGATTTCATCTTTGGCAATGCTGCAGTAGTGTTCCAAAATTGTAACATTTTTGCAAGAAAGCCTTTAGATGGCCAAGATAACATGATTACAGCACAAGGTAGAGGAGATCCATTTCAAAACTCTGGAATTTCAATCCACAATTGTCAAATAAAAGCTGCACAAGACCTTAAGCCATTTGTTGATAAATACAGAACCTTTTTGGGTAGGCCATGGCAACAATACTCTAGAGTAATGGTAATGAAAACTTTCATGGACACTTTGGTGAATCCATTGGGTTGGTCTCAATGGGGTGATAGTGACTTTGCTCAAGATACATTATATTATGGAGAGTATAAAAATTATGGGCCAGGTTCATCTACAAGGAACAGAGTAAAATGGCCAGGTTTTCATGCAATAAAAAACTCTGCTGAAGCATCTCAGTTCACAGTTACTGCCCTTCTTGCTGGTCATACTTGGTTGCCTACAGCGGTTGTGCCATTTACCTCTGGCCTTTGA 1584 0.3902 MVKIFITLLLFSVFSIASSRITPSSNSNIDWWCNLTPHPKPCKHYISQINHFSNIKHKSEFRAMLVKLVLKQVVIMQSEAQDFEQNLVTKKHKAVHNDCLKLYENTIFHLNRTLEGLHVKKTCSPVDTQTWLSTTLTNIQTCQTGATDLSVEDFKVSKLSNNVTKMIRNSLAINMDFMKQNGDNHKAETKEAFPSWFSRHDRKLLQSKSSIKAHLVVAKDGSGHFKTVQEALNSASNRKTKRRYIIHVKKGVYAENIEVKKNNDNIMLIGDGMAKTIITSHLSVKDGFTTYSSATAGIDGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAIAGYQDTLMAHAQRQFYRQCYIYGTVDFIFGNAAVVFQNCNIFARKPLDGQDNMITAQGRGDPFQNSGISIHNCQIKAAQDLKPFVDKYRTFLGRPWQQYSRVMVMKTFMDTLVNPLGWSQWGDSDFAQDTLYYGEYKNYGPGSSTRNRVKWPGFHAIKNSAEASQFTVTALLAGHTWLPTAVVPFTSGL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0841 527 PANTHER PECTINESTERASE 4 526 - -
Lan20g0841 527 Pfam Plant invertase/pectin methylesterase inhibitor 28 173 IPR006501 GO:0004857
Lan20g0841 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 174 IPR006501 GO:0004857
Lan20g0841 527 PANTHER PECTINESTERASE 4 526 - -
Lan20g0841 527 Gene3D - 208 527 IPR012334 -
Lan20g0841 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Lan20g0841 527 SUPERFAMILY Pectin lyase-like 211 526 IPR011050 -
Lan20g0841 527 CDD PMEI-like_3 31 179 - -
Lan20g0841 527 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Lan20g0841 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 177 IPR035513 -
Lan20g0841 527 SMART PMEI_2 24 173 IPR006501 GO:0004857
Lan20g0841 527 Pfam Pectinesterase 215 512 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0841 Lan-Chr20 7774099 7775841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0841 24 527 Carbohydrate Esterase AT3G47400 56.202 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0841 K01051 - gmx:100806133 797.734