Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0820 ATGGATCATGTTATTGGTGGAAAATTCAAGCTTGGGAGGAAGATTGGAGCTGGATCGTTTGGAGAACTTTATTTGGGTGTTAATGTACAAACTGGAGAGGAAGTGGCTGTCAAATTGGAACCTGCGAAGACCAAGCATCCTCAACTTCACTATGAGTCAAAATTGTACATGCTTCTTCAAGGGGGAACTGGAATACCCCATTTAAAATGGTTTGGAGTTGAGGGTGACTACAATGTCATGGTAATTGACCTTCTTGGACCAAGTCTTGAAGACTTGTTTAACTATTGCAACCGGAAACTATCTCTGAAGACAGTTCTGATGCTTGCAGATCAGCTGATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCATCGTGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGCAAGGCAAATCAGGTATATGTAATTGATTATGGCCTTGCAAAAAAGTATAGGGATCTTCAAACACATAAACATATACCTTACAGGGAAAACAAGAACCTCACTGGAACTGCTCGATATGCAAGTGTTAATACCCACCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGCTATGTGCTCATGTACTTTTTGAGAGGAAGTCTCCCTTGGCAAGGCATGAAAGGTGGAACTAAAAAGCAGAAGTATGACAAGATTAGTGAAAAGAAGATGCTTACTCCGATAGAGATATTATGCAAGTCATATCCATCGGAATTCACATCTTACTTCCACTACTGTCGATCATTGAGGTTCGAAGATAAGCCTGATTATTCATATCTTAAGAGACTCTTTCGGGACCTATTCATTCGGGAAGGTTATCAGTTTGACTATGTATTTGATTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCTAGAGCTCGACCAAGTGGGAAGCCAGCCATAAACCTGGGACCTGAACTGTCGGGAGTGAGAGTAGAACGGCCTTCAGGTGTGCCAGAGGTCCGGGATAGATTGTCTGGTGCACTCGAGGAATTTGCAAGAAGGAATAGACCGACTAGCTCCGGGCTTGGGCTGCATGGTGATAATTCTAGGCATAGGTCTTCAGATGATGTGCCATCTTCCAAAGATGTGCAAGCTGATTCTGAGAGGCCTCGTAGCTCTTCTCGTAATGGCAGTACCTCAAAACGGCCCGTCGTATCAAGCAGCCGACCAAGCACATCCGGTGAACCTAATAAAAGCCATTCTGGTCGACTGGTCTCAAGCAGTGGTCGTCTGTCTACAACTCAGAGGATTCTACCAGGTTTAGATTCCAAAACATTCTTCACTCGTGCTTCCGGGTCAAGAGGTGGTCGCGATGATACACTTCGGAGCTTTGAACTCCTGTCAATTGGCAGGAAAAAGGAAATGAAGACAGTACAGTGA 1416 0.4379 MDHVIGGKFKLGRKIGAGSFGELYLGVNVQTGEEVAVKLEPAKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGMKGGTKKQKYDKISEKKMLTPIEILCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRARPSGKPAINLGPELSGVRVERPSGVPEVRDRLSGALEEFARRNRPTSSGLGLHGDNSRHRSSDDVPSSKDVQADSERPRSSSRNGSTSKRPVVSSSRPSTSGEPNKSHSGRLVSSSGRLSTTQRILPGLDSKTFFTRASGSRGGRDDTLRSFELLSIGRKKEMKTVQ* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0820 471 PANTHER CASEIN KINASE-RELATED 1 454 - -
Lan20g0820 471 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan20g0820 471 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lan20g0820 471 MobiDBLite consensus disorder prediction 300 451 - -
Lan20g0820 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan20g0820 471 MobiDBLite consensus disorder prediction 360 381 - -
Lan20g0820 471 MobiDBLite consensus disorder prediction 327 342 - -
Lan20g0820 471 MobiDBLite consensus disorder prediction 382 442 - -
Lan20g0820 471 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 454 - -
Lan20g0820 471 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0820 471 Pfam Protein kinase domain 10 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0820 471 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Lan20g0820 471 CDD STKc_CK1_delta_epsilon 8 282 - -
Lan20g0820 471 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0820 Lan-Chr20 7311990 7317490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0820 8 213 MAP Kinase Kinase Kinase AT3G06030 25.000 1.16e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan20g0820 Pkinase 6.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0820 K08960 - mnt:21404312 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0162 8 2706109 2711691 Lan20g0820 20 7311990 7317490 LSH