Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0817 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGACTACAGAAGAAGATCAAATTCTCATTTCTTATGTCCAAAAACATGGCCATAGTAATTGGCGTGCACTTCCTAAGCAAGCAGGGTTGCTAAGGTGTGGGAAAAGCTGCAGATTGCGTTGGACTAACTATTTGAGGCCTGATATTAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAACTATCATTAAGCTGCATCATATGTTAGGGAATAGGTGGTCAACTATTGCAGCCAAATTACCAGGAAGAACTGATAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAGGTTACTACTGAAAACAAATCAACTCAATTCAGATCACAAAATTAGAGTCTCTAGACCAAAAATCAAACGCTCAAATTCCAACTCAAGCACCATAACTCAATCAGAACCTGACACATCAACATGCACCACTTCTAGTTATTTTTCATCTGCCACAGTTGATGAAAGCAAAAAGATCAAGATTGAAGACATAGAGTCTCTAGAAGAAACAATGCCTGAAATTGATGAAAGCTTTTGGTCAGAAAATGCAACAATGGATGATGAAACCCCTACCACCATGGTTCCATCAAAATCTTTGACTATCTCAAATGAGTTACCACTTCAATGCCCTTCTAATAATTATGAGGAAAGTTTCCAACAGAGTAATGGTTATATTTCAAACTTGGATGATGGCATGGATTTCTGGTATGACATATTTATCAGAACTGGTGATTCAATAGAATTGCCAGAGTTCTGA 798 0.3759 MVRAPCCEKMGLKKGPWTTEEDQILISYVQKHGHSNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFTNEEEETIIKLHHMLGNRWSTIAAKLPGRTDNEIKNVWHTHLKKRLLLKTNQLNSDHKIRVSRPKIKRSNSNSSTITQSEPDTSTCTTSSYFSSATVDESKKIKIEDIESLEETMPEIDESFWSENATMDDETPTTMVPSKSLTISNELPLQCPSNNYEESFQQSNGYISNLDDGMDFWYDIFIRTGDSIELPEF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0817 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan20g0817 265 CDD SANT 69 112 IPR001005 -
Lan20g0817 265 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Lan20g0817 265 SMART sant 66 114 IPR001005 -
Lan20g0817 265 SMART sant 13 63 IPR001005 -
Lan20g0817 265 CDD SANT 16 61 IPR001005 -
Lan20g0817 265 MobiDBLite consensus disorder prediction 133 160 - -
Lan20g0817 265 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Lan20g0817 265 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan20g0817 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan20g0817 265 MobiDBLite consensus disorder prediction 136 160 - -
Lan20g0817 265 Gene3D - 69 116 - -
Lan20g0817 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan20g0817 265 Gene3D - 13 66 - -
Lan20g0817 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan20g0817 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan20g0817 265 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0817 Lan-Chr20 7258128 7260703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0817 1 265 MYB Transcription Factor Family AT2G31180 48.134 2.22e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0817 Myb_DNA-binding 7.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0817 K09422 - gmx:100807569 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0168 8 2772834 2775747 Lan20g0817 20 7258128 7260703 LSH