Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0814 ATGACAAATGAAATTGTGAAGGCACAGAGAAATAAGGCAAAGGTCTCAACACCATTGACATGTTTCTTATGTAATCAATTGTTCACAAATGCCACTACTATGGTTGAATGCTTGCATACTTTTTGCAGAGAATGCATAGAGAAGAAGATAACAGATGAGAAAATAACACACTGTCCAGTATGCAATACAGACTGGGGTTATCTTCCACAGGATAAATTAAAAGCAGATCACAGACTACAAGGTTTGAGGGACAGAATTTTCCCCTCTAAAGGAAAAAATGCCAATGCACCTGAAAATGTGCCTCCGGTTACCTTGCGAACAAAGACAAAGGAGGATTCTCTATTGTCACTGAAGGCCAGTGCAAGAAAAGCAAAAACTGCTGCAAAACAAGTTGTCACTCCAAGAAGATCAGATATTTCTTTTGCAGAACATGATAAAGTGATTCGGAATGATGGAAAACACCCCGGGATAGAAATTTTGGATGAAGTTTCTACAATTCTATCTGCAAGAAGAGCAAAAGTTGCTGCAAGAAAAAAAATTATTCAGAGAGAATCGACTCATCCTAGTCAACCTGACAAAGTAACAATAAATGAAAAGGAAGATTATGGTCATTCCCAGTCAAATGGAACTTCCAAAACAAGAGTTCAGAACCCTTCAAAACCAGAATCCAGGAAACAAATTGTGCCTAAGAAGACTTGTGAGAGTACTTCTGAGTTATGTAAAGAAAAGTTTGATATGTCTGAGCCATTAACTTCCTTGGTGGAAGCTGTAAGAAGAAATAAGTCAAGTAATATGTCTCCTATGAAAGAAGTTGCTGTGATTTCTGTTCCTATATACTCTAGTGACAATGATTCTCAGGGGCCTAAGGTTCAAGTTAAGAAACATAGTCACACTGGTGAAAAGAAAGAGTCAAGTTCTGCCAAACTTAAAAGGTTGCAGGGCACTCAAGAAAGAACAATCAAATTCTCCGGGGACTTGAATTTTCCAGTGCCAGCACCAGTGATTGGTTCAAGCAACAACAAATTTGGGAACCTTCCATCTCAACCTGTGAATGGTTCAAGCGGTAAAAACGAAAAAATATGTAGTGGTCCAGTCTGGCTCTCCTTGGTTGCTTCCGAAGACAAGGAAGTAGGTGCAAGATTGCCTCAAATATCTACCCGCTTCATTAGAGTCAAGGATGGTAGTTTACCTGTCTCTTACATCGAAAAGTATATCGTCAAGAAGCTCGGTCTTCCTAGTGATGCTGAGGTGGAGATCTTACTATGGGGTCAGCCAGTTTTATCTTCATGGAAACTACAAAACTTAGTAGAGTTATGGTTGCAAACAATGCCAAAGGATGAGAAGATTCATACATTTGTTGGAAGCTCAGCTAAGGATTTTGTTATGGTCCTTTCATATGGACTAAAAGCTTGA 1413 0.3907 MTNEIVKAQRNKAKVSTPLTCFLCNQLFTNATTMVECLHTFCRECIEKKITDEKITHCPVCNTDWGYLPQDKLKADHRLQGLRDRIFPSKGKNANAPENVPPVTLRTKTKEDSLLSLKASARKAKTAAKQVVTPRRSDISFAEHDKVIRNDGKHPGIEILDEVSTILSARRAKVAARKKIIQRESTHPSQPDKVTINEKEDYGHSQSNGTSKTRVQNPSKPESRKQIVPKKTCESTSELCKEKFDMSEPLTSLVEAVRRNKSSNMSPMKEVAVISVPIYSSDNDSQGPKVQVKKHSHTGEKKESSSAKLKRLQGTQERTIKFSGDLNFPVPAPVIGSSNNKFGNLPSQPVNGSSGKNEKICSGPVWLSLVASEDKEVGARLPQISTRFIRVKDGSLPVSYIEKYIVKKLGLPSDAEVEILLWGQPVLSSWKLQNLVELWLQTMPKDEKIHTFVGSSAKDFVMVLSYGLKA* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0814 470 MobiDBLite consensus disorder prediction 288 308 - -
Lan20g0814 470 MobiDBLite consensus disorder prediction 201 223 - -
Lan20g0814 470 Pfam Zinc finger, C3HC4 type (RING finger) 21 61 - -
Lan20g0814 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 125 IPR013083 -
Lan20g0814 470 MobiDBLite consensus disorder prediction 280 309 - -
Lan20g0814 470 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Lan20g0814 470 MobiDBLite consensus disorder prediction 178 234 - -
Lan20g0814 470 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 6 468 - -
Lan20g0814 470 SMART ring_2 21 61 IPR001841 -
Lan20g0814 470 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Lan20g0814 470 SUPERFAMILY RING/U-box 17 80 - -
Lan20g0814 470 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 6 468 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0814 Lan-Chr20 7223825 7228213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0814 1 392 C3H Transcription Factor Family AT2G30580 29.736 1.59e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0814 K16277 - jre:108989436 288.885
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0173 8 2816174 2820496 Lan20g0814 20 7223825 7228213 LSH