Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0812 ATGGCAACAACTTTGTTAGGAAAGGAGCATGGTTTGAACCTGAAGGAGACTGAGCTTTGCCTTGGTTTGCCTGGTGGTGGTGGTGGTGGCGGCTCTGAGGTGGAAACTCCAAGGGCCAATGGGAAGAGAGGGTTCTCTGAAACTGTTGATCTGAAGCTTAATCTTCCTTCCAGGGAAGATCTGAATGATAATATGAAGAATGACTCCAAGGAGAAGACCCTCCTTAAGGACCCTGTCAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACTTGATGGCACAAAAGGTTAACACTGAGGATGGCACTGAGAAGACAAGTTCTGGTGCATTTGTGAAGGTTTCCATGGATGGTGCACCTTATCTACGCAAGGTGGACCTGACAGTGTACAAATGCTACCAAGAATTAGCTGATGCTTTAGCCAAAATGTTCAGCTCCTTCACCATGGGTGACTATGGGACCCAAGGAATGATAGACTTCATGAATGAAAGTAAGTTGATGGATCTTCTGAACAGCTCTGAATATGTGCCAACCTATGAAGATAAGGATGGTGACTGGATGCTCGTGGGTGATGTCCCATGGGAGATGTTTGTTGGGTCATGCAAGCGTCTGCGAATAATGAAAGGGTCAGAAGCAATTGGGCTTGCACCAAGAGCCATGGAAAAATGCAAACGCAGAAGCTGA 708 0.4703 MATTLLGKEHGLNLKETELCLGLPGGGGGGGSEVETPRANGKRGFSETVDLKLNLPSREDLNDNMKNDSKEKTLLKDPVKPPAKAQVVGWPPVRSYRKNLMAQKVNTEDGTEKTSSGAFVKVSMDGAPYLRKVDLTVYKCYQELADALAKMFSSFTMGDYGTQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKRRS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0812 235 ProSiteProfiles PB1 domain profile. 117 217 IPR000270 GO:0005515
Lan20g0812 235 SUPERFAMILY CAD & PB1 domains 115 216 - -
Lan20g0812 235 MobiDBLite consensus disorder prediction 24 46 - -
Lan20g0812 235 Gene3D - 111 229 - -
Lan20g0812 235 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 228 IPR003311 GO:0005634|GO:0006355
Lan20g0812 235 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 8 228 - -
Lan20g0812 235 Pfam AUX/IAA family 39 226 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0812 Lan-Chr20 7191359 7193760 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0812 112 225 B3 DNA Binding Superfamily AT4G23980 31.579 3.29e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan20g0812 AUX_IAA 5.2e-80 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0812 K14484 - gmx:100810762 385.956