Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0811 ATGGAAAGCAAAGTGGTATATGAGAATGATCTTAACCTCAAGGCAACAGAACTTAGATTGGGGCTGCCAGGGACAGAAGAGAATGAAGAAAAAACAAAGTCTAGTGTTAGAACCAACAAAAGGCCATTGATTGAAACTTCTGAGGAGTGTGGTTCAAAGGGATCTAATGTTCAACATGTGAACAATGATGTAGCCCCTCCTTCTAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCTTACAGGAAAAACAGCATTCAAGAGGCTGAATCTGAGGGTGCTGGGATCTATGTGAAAGTGAGCATGGATGGAGCACCTTACCTAAGAAAGATAGATTTGAGGGTTTATGGAAGCTACCCACAACTCCTCAAAGCTCTAGAAAACATGTTCAAGTTAACAATAGGTGAATACTCAGAAAAAGAAGGTTATAAGGGATCTGATTTTGCACCTACATATGAAGACAAGGATGGTGATTTGATGCTAGTTGGAGATGTTCCATGGGATATGTTTGTGACTTCATGCAAAAGGCTAAGAATCATGAAAGGATCAGAAGCAAGAGGTTTGGGTTGTGGTGTATGA 579 0.4111 MESKVVYENDLNLKATELRLGLPGTEENEEKTKSSVRTNKRPLIETSEECGSKGSNVQHVNNDVAPPSKAKIVGWPPIRSYRKNSIQEAESEGAGIYVKVSMDGAPYLRKIDLRVYGSYPQLLKALENMFKLTIGEYSEKEGYKGSDFAPTYEDKDGDLMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0811 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
Lan20g0811 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 189 IPR003311 GO:0005634|GO:0006355
Lan20g0811 192 MobiDBLite consensus disorder prediction 18 40 - -
Lan20g0811 192 SUPERFAMILY CAD & PB1 domains 91 181 - -
Lan20g0811 192 Gene3D - 89 192 - -
Lan20g0811 192 Pfam AUX/IAA family 16 189 IPR033389 -
Lan20g0811 192 MobiDBLite consensus disorder prediction 23 40 - -
Lan20g0811 192 PANTHER AUXIN-INDUCED PROTEIN 10 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0811 Lan-Chr20 7158838 7160498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0811 98 188 B3 DNA Binding Superfamily AT2G46530 38.462 1.45e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan20g0811 AUX_IAA 2.3e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0811 K14484 - jre:109004346 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0175 8 2851180 2853804 Lan20g0811 20 7158838 7160498 LSH