Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0808 ATGGAATCAGGGTTGCCACCGCAACCATCAACGGCGCCGCCGTCACTTTCATCGCGCTCCGCCACCACCATCCTTGGAAAGTACCAATTGACGCGTCTTCTCGGCCGTGGAAGCTTCGCTAAGGTGTACCAGGCTCAATCCCTCATCGACGGCACTACTGTCGCCGTTAAAGTCATCGATAAATCGAAAACCGTTGACGCCGCCATGGAACCACGCATCGTTCGCGAGATCGATGCCATGCGCCGCCTTCATCATCACCCTAACATCCTCAAAATCCATGAAGTCATGGCCTCAAAAACGAAGATCCATCTCGTCGTCGAGTTCGCCGCCGGCGGAGAACTCTTCTCCAAGATCAACCGCCGCGGAAAGCTCCCTGAGAATTTGGCACGGCGTTTGTTCCAGCAGCTCGTCTCCGCGCTCCGTTTCTCCCACCGCAACGGCGTCGCACACCGCGATCTCAAACCGCAGAATCTCCTCCTCGACGGCGAAGGCAACCTCAAAGTCTCGGACTTCGGCCTCTCCGCGTTGCCGGAACATCTCAAAAATGGTCTCCTCCACACCGCGTGCGGAACTCCGGCGTACACCGCGCCCGAGATTCTCCGACGCGGCGGTGGTTACGACGGTTCAAAAGCCGACGCGTGGTCATGTGGCCTAATCCTCTTCGTTCTCCTAGCCGGTCACCTTCCCTTCGATGATTCAAACATTCCGGCGATGTGCAAGATGATTTCCCGGCGAGATTTTCGGATTCCAGATTGGATTTCAAAACCAGCTCGATTCGTAATCAAGCGGTTACTTGATCCAAATCCAGCAACCCGAATGAGCCTAGAATCTCTATACAATAATAACTCATGGTTCAAAAAATCACTTCGACCCGAACCCGAAGAAAGCGTATTCGGGTCGGGTCTATATAAAAACGGTTACGATAACTCACACGAGGGTTGTTGTTACAAGGGTTCAGGTGTGAACGCGTTTGATATAATATCCATGTCTTCAGGTTTGGATTTGAGGGGTTTGTTTGAAACGAAGTCGTATAGGAACAATGAGAGAAGGTTTAGTTCAAATAAGAGGTTGGAGGAGGTGGAGGAGAAGGTGAAAGAGGTTGGAAGTGTTTTGGGGTTTAGAGTTGAAGTTGGGAAGAATGGTGCAATTGGGTTTGGGAAAGGGAAAGTGGGTTTGGTTATTGAAGTGATTGAAATTATTGAAAATGAATTGTTGTTGGTGGCTATGAAGATTGTTGATGGTGGGTTGGAATTTGAGGAGCTTCATTGGGAGGATTGGAAAGTTGGGTTGCAAGATGTTGTGCTTTCTTGGCACAATAATAATGAATCACCAACATTATCAAATATGTACAATGAATGA 1359 0.496 MESGLPPQPSTAPPSLSSRSATTILGKYQLTRLLGRGSFAKVYQAQSLIDGTTVAVKVIDKSKTVDAAMEPRIVREIDAMRRLHHHPNILKIHEVMASKTKIHLVVEFAAGGELFSKINRRGKLPENLARRLFQQLVSALRFSHRNGVAHRDLKPQNLLLDGEGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRRGGGYDGSKADAWSCGLILFVLLAGHLPFDDSNIPAMCKMISRRDFRIPDWISKPARFVIKRLLDPNPATRMSLESLYNNNSWFKKSLRPEPEESVFGSGLYKNGYDNSHEGCCYKGSGVNAFDIISMSSGLDLRGLFETKSYRNNERRFSSNKRLEEVEEKVKEVGSVLGFRVEVGKNGAIGFGKGKVGLVIEVIEIIENELLLVAMKIVDGGLEFEELHWEDWKVGLQDVVLSWHNNNESPTLSNMYNE* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0808 452 Pfam NAF domain 321 376 IPR004041 GO:0007165
Lan20g0808 452 Gene3D Kinase associated domain 1, KA1 318 435 - -
Lan20g0808 452 SUPERFAMILY Protein kinase-like (PK-like) 24 280 IPR011009 -
Lan20g0808 452 Pfam Protein kinase domain 28 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0808 452 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Lan20g0808 452 ProSiteProfiles Protein kinase domain profile. 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0808 452 Gene3D Transferase(Phosphotransferase) domain 1 18 311 - -
Lan20g0808 452 PANTHER SERINE/THREONINE KINASE 19 440 - -
Lan20g0808 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Lan20g0808 452 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 19 440 - -
Lan20g0808 452 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Lan20g0808 452 CDD CIPK_C 322 431 - -
Lan20g0808 452 SMART serkin_6 28 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0808 Lan-Chr20 7107215 7108932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0808 1 440 Miscellaneous Gene Families AT3G23000 56.278 3.99e-168 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan20g0808 Pkinase 4.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0808 K12761 - gmx:100784173 626.706