Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0802 ATGGAGGGAAAGGAGAATTTTGTTGGTGTTGGGCAACCTCATGCAGTGTTAGGTGGTGAAGCTCCAGATAGCTTCCAATTGGCTCCTAGAATTGAGAACAACTTGGATTTTTCCAGAGCCACAGTCCCGGTTTCGTCGCCCGCAACGGAGGGGAAGAAAAAGAGAGGGAGGCCTCGGAAGTATGGAGCAGATGGTAAGGCTGCAGCCTTGGCTTTGTCTCCGATGCCGATTTCGTCATCGATTCCGTTGACTGGAGATTTCTCAGCCTGGAAAAGGGGGAGAGGGAGGCCTGTTGAATCTGTAAAGAAGTCAACATATAAGTATGAAGTTGAAGGTCCAAGACCAGGTGAGGGGATTGCATACTCAGTTAGTGCCAATTTCACAGCACATGTGCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGATCATGTCCTTTTCACAACAAGGATCACATGCTATATGCATTCTCTCTGCAAATGGCATGATTTCAAATGTTACACTTCGTCAACCAACTTCGTCAGGGGGTACCCTAACATATGAGGGACGGTATGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTGCGAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGACGGTCGGGTGATGGGGGGTGGACTTGCTGGTTTGCTGATAGCTGCAGGACCTGTGCAGGTTGTTGTGGGCAGTTTTCTTCCTGGTCACCAGCTAGAGCATAAACACAAGAAGCAGATGGTGGAGCATGTATCGACTATTACCCCGACACATGCTAACCCTATATCTAATAACGAGGGAATAAAAATCAGTTTTGGTGGATTTAAGCCTATTATGACACCTGCTGCTTTTCAAGAAGAGAATATTGCTTCTTATAACAATGTTCAAGACTCTAGGAACTCATCTTCTGATGATAAAGAACCTTTCGCCGAAAAGGAGTATAATCCAAGCCAATAA 984 0.4593 MEGKENFVGVGQPHAVLGGEAPDSFQLAPRIENNLDFSRATVPVSSPATEGKKKRGRPRKYGADGKAAALALSPMPISSSIPLTGDFSAWKRGRGRPVESVKKSTYKYEVEGPRPGEGIAYSVSANFTAHVLTVNAGEDVTMKIMSFSQQGSHAICILSANGMISNVTLRQPTSSGGTLTYEGRYEILSLSGSFMPTENGIARSRSGGMSVSLAGPDGRVMGGGLAGLLIAAGPVQVVVGSFLPGHQLEHKHKKQMVEHVSTITPTHANPISNNEGIKISFGGFKPIMTPAAFQEENIASYNNVQDSRNSSSDDKEPFAEKEYNPSQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0802 327 Gene3D - 128 263 - -
Lan20g0802 327 SMART AT_hook_2 52 64 IPR017956 GO:0003677
Lan20g0802 327 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Lan20g0802 327 MobiDBLite consensus disorder prediction 302 327 - -
Lan20g0802 327 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Lan20g0802 327 CDD DUF296 130 242 IPR005175 -
Lan20g0802 327 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 245 - -
Lan20g0802 327 ProSiteProfiles PPC domain profile profile. 123 266 IPR005175 -
Lan20g0802 327 MobiDBLite consensus disorder prediction 309 327 - -
Lan20g0802 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 13 320 - -
Lan20g0802 327 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 320 IPR039605 GO:0003680
Lan20g0802 327 MobiDBLite consensus disorder prediction 38 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0802 Lan-Chr20 6978746 6983585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0802 52 255 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 64.186 3.03e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0802 - - gmx:100789179 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0185 8 3138582 3143672 Lan20g0802 20 6978746 6983585 LSH
Lan20g0802 20 6978746 6983585 Lan4g1262 4 21204051 21208704 LSH
Lan8g1142 8 15407871 15414252 Lan20g0802 20 6978746 6983585 PCT
Lan20g0802 20 6978746 6983585 Lan8g1142 8 15407871 15414252 PCT