Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0801 ATGTTGAGGTCGTTCGTGCAGCCAATAGGGCAGAAGAGGCTAACAAACGTGGCGGTGGTGCGTCTCAAGAAGCATGGCATGCGCTTTGAGATTGCCTGCTACCCAAACACTGTTCTCTCTTGGCGATCGGGAGTGGAGAAGGACATTGATGAAGTGTTGCAGTCGCACACGGTTTATTCTAACGTTTCGAAAGGGGTTCTTACCAAATCAAAGGATTTGAATGCAGCTTTTGGGACAGATGATCAGTCCAAGATATGTTTAGAGATTTTGAAGAAAGGGGAGCTTCAGGTTGCTGGGAAAGAGAGGGAGTCTATCCTGTCAAGTCAGTTCAGGGATATTGCTACCATTGTGATGCAGAAGACCTACAATCCGGAGACTCAGCGCCCTTACACTATCAGTATGATTGAACGCCTTATGAGGGAAATTCATTTTGCTGTTGATCCAAATTGCACATCCAAGAAACAGGCTCTGGGGTTGATTCAAGAGCTTCAAAAGCATTTCCCAATAAAACGGTGTCCATTAAGAATACGAGTTGCTGCTCCTGAGGAGGAAGTTGCTGCCCTTTTAGAAAAGCTGAATATATGGAAGGCAACCATTGTTTCTAAAGAAGGATCTGCTGGTCAGCTATCTGTTGTTTTTGAACTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATAACCTGCATGGAAGATTTGAAGTTCTTGCACACTCTCTTTATGTCGATGGGGACACCCAAGTGGAGCAATACAACAATTACGAGGATATGCCTGCTCCATTGCCCAAACAAACTCGTGAATCTTTGCTTGAACTGAATGATAAACTTCAAAAGCAGACAATTTCATCTGTGAGTAAGCCTACTACTGAGGGACAGCAACAAAAGCAAAACAAGTGCAACACATGCAATGTTTCTTTTGAAGATGCTAAGGTGTATAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAGACAAGGCAACTGCCACCCCTTACTGAGGAAGAGTGCATGGCAGATTTGGAATTGAGTGACTCAAAATCTGATTTGAAAGATTATTCATTTTGA 1083 0.4331 MLRSFVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYSNVSKGVLTKSKDLNAAFGTDDQSKICLEILKKGELQVAGKERESILSSQFRDIATIVMQKTYNPETQRPYTISMIERLMREIHFAVDPNCTSKKQALGLIQELQKHFPIKRCPLRIRVAAPEEEVAALLEKLNIWKATIVSKEGSAGQLSVVFELEPGLYKDCHDFVMNNLHGRFEVLAHSLYVDGDTQVEQYNNYEDMPAPLPKQTRESLLELNDKLQKQTISSVSKPTTEGQQQKQNKCNTCNVSFEDAKVYREHHKSEWHKHNMKRKTRQLPPLTEEECMADLELSDSKSDLKDYSF* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0801 360 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Lan20g0801 360 Gene3D - 100 172 IPR037188 -
Lan20g0801 360 Gene3D - 2 96 IPR036786 -
Lan20g0801 360 SUPERFAMILY beta-beta-alpha zinc fingers 290 330 IPR036236 -
Lan20g0801 360 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Lan20g0801 360 Gene3D Classic Zinc Finger 289 345 - -
Lan20g0801 360 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Lan20g0801 360 MobiDBLite consensus disorder prediction 319 338 - -
Lan20g0801 360 ProSitePatterns Zinc finger C2H2 type domain signature. 301 323 IPR013087 -
Lan20g0801 360 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Lan20g0801 360 Gene3D - 174 251 - -
Lan20g0801 360 PANTHER BNAANNG06530D PROTEIN 1 360 - -
Lan20g0801 360 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 227 IPR002140 GO:0042256
Lan20g0801 360 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Lan20g0801 360 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 360 IPR039100 -
Lan20g0801 360 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0801 Lan-Chr20 6971135 6974009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0801 27 360 C2H2 Transcription Factor Family AT1G43860 57.681 8.42e-141 401