Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0792 ATGGTCATTAGTGGAGGGAAAACTCTGAAGCGAATGAAAAGGAGAGTCACCGCAGACTTCTACGACTTCCTCTCGTTCCCGTCTCCTTCTCTCGTCACGACGGAAAACTTCGCCGGAGAACCGTTCCGTACCAACGTGCGATCATTCCTCACCAAACACGCGCTTCTCCCCCCGCCATCGGCTCTGTTCCCGCATCTTATGACGTGGCAGATCCTCTTCCGAATCGGTGATCTCACCGACGGTTTCCCTGAGTCGGTTCCGGCGGTTGTGTGCCTCGACGTGGTGGAGGAAGACGTGGCCAGATCCAGATCCGTGTATTGCGACCAATGCCGAGTTTTCGGCTGGAGTGGTCACCCAGTTTGTGGAAAACGTTACCATTTTATAATCAAAGCTGATGGGAGCTCCATTGGTGGGTACCACAAGCCGTGTATGTGCTGTGGAGATATCCTGCATTTGTCAGAATCCAGGTGCAAGTCATGCAACCATGTTACAACCACTGATGATGTTGAAGACTGGGTGTATCACCAGTTAGAGAACACAACTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGCTCTAGATTTCTTTCCGGATGCCATATTATGGATTTCTGGGATCGCCTCTGCAAGACACTTGGAGTTAGAAAAGTAAGCGTGATGGATGTTTCAAAGAAATATGGGCTAGATTACCGCTTGCTCCATGCCATTATGAAGGGGCATCCATGGTATGGTGACTGGGGCTATGAATTTGGGTCTGGCAGCTACTGTCTCACACAGGAAGCATATAAAAATGCTGTTGAAAACTTATCCAATCTACCCTTGTCGATCTTCCTATCCAATGGACAGAATCTCCACTCTCGTTTGCAGGACATGCTCTCTTATTACCAGTCATTGTCAGAGCATAAGCTTGTAAATATGAGGGACCTCTTTTGTTTTTTGATGTATTTGATTAAAGATGTTCACAAGACTGTGCCAAAGGTTGATGACATAAACTGCAAGAAGCGCCGATTTAATGCTTCTGGAATTTCAAGTTCTTGGGAGAAGAATGACATTGAATGTGTGAAGGAGGCCATGCTCAGAGTGCTGCGAGCAGTGTCCGGGTCCAATTGGGTGAGCTGGCGTGCTGTTAGGGGTGCTGTCTGCAAGGTGGCCTCTCCAGAGCTGCTTGATTATTGCCTTGGAGAACTGGAAGGAAAAGTGGTCTGTGGTGGAATGGTTGTTAATACCCGTTGCAATCCTCAAACTGGGACTTTAGAGTGCAGACTTGAGGCTGCAAATGATTCTTGCTACGGAATCATAGCAAACAACAATTCCTCAGGCTTAAAGTTTCCATCTGAAGAGAATCTCCTACAATGCTTGAAATATTTATACGAGTCTATGCTTCACCCTCAGATGATGCTAAAATATGTCACAGAAGAGACAAGGATTCCTGCATTGACTTCTGCTCAGAAACTTCTTGACTGCAAGCAGTTTGTAAAAGCTTATAGTCCTGAAATGTTCCCAGTATCAGATTTTTATAAAATACGCATCCCATGCCAGGTTGAACTTGCTGATGAATCTGAAGATTGTGCAGGTAGAACTCCACCAGAATTAATTGTGCTACCCATGAATGCCACATTGTATGACCTTAAGGTAGAAGCAACAAATGCTTTTCAAGATGTATATCTTATGTTTAGAAGATTTCAAGTTGATGAGCTACTTGGTTATCGCGGTGTAGATGATTCCACCCAAGTCATGCTCTTGTTAGGGTCAAAAGAAACAGTTTGTATGCGAGGAAGGTTCATTGGGAAGAATGGATTGAACAAATTCCGAATGGAACGAGGACTTGAAAGGTGGACTTTAGATTGCAGCTGTGGGGCTAAGGATGATGATGGCGAAAGAATGTTGGCTTGTGATATATGTGAGGTGTGGCGGCACACTAGGTGCTCCGACATTCATGATACTGATCCTGTTCCAGCATGTTTTGTTTGCCCAAAATGTCTGAACTTTGACTCAAAAACTAAATCTACTGGGCACTGCAAAGATGAGACTGCGGCTAACGTTAGCACTGGTAGTAGTTGCTTTGGAAACGGCTTGTCAGTGCCTCCTGATGTTCGTTAA 2139 0.4549 MVISGGKTLKRMKRRVTADFYDFLSFPSPSLVTTENFAGEPFRTNVRSFLTKHALLPPPSALFPHLMTWQILFRIGDLTDGFPESVPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESRCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLDYRLLHAIMKGHPWYGDWGYEFGSGSYCLTQEAYKNAVENLSNLPLSIFLSNGQNLHSRLQDMLSYYQSLSEHKLVNMRDLFCFLMYLIKDVHKTVPKVDDINCKKRRFNASGISSSWEKNDIECVKEAMLRVLRAVSGSNWVSWRAVRGAVCKVASPELLDYCLGELEGKVVCGGMVVNTRCNPQTGTLECRLEAANDSCYGIIANNNSSGLKFPSEENLLQCLKYLYESMLHPQMMLKYVTEETRIPALTSAQKLLDCKQFVKAYSPEMFPVSDFYKIRIPCQVELADESEDCAGRTPPELIVLPMNATLYDLKVEATNAFQDVYLMFRRFQVDELLGYRGVDDSTQVMLLLGSKETVCMRGRFIGKNGLNKFRMERGLERWTLDCSCGAKDDDGERMLACDICEVWRHTRCSDIHDTDPVPACFVCPKCLNFDSKTKSTGHCKDETAANVSTGSSCFGNGLSVPPDVR* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0792 712 ProSitePatterns Uncharacterized protein family UPF0054 signature. 185 195 IPR020549 -
Lan20g0792 712 SUPERFAMILY FYVE/PHD zinc finger 623 678 IPR011011 -
Lan20g0792 712 SMART PHD_3 628 674 IPR001965 -
Lan20g0792 712 CDD PHD_MMD1_like 628 673 - -
Lan20g0792 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 684 - -
Lan20g0792 712 PANTHER OS01G0877500 PROTEIN 1 684 - -
Lan20g0792 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 614 680 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0792 Lan-Chr20 6850904 6856756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0792 87 673 PHD Transcription Factor Family AT5G22260 30.210 1.20e-84 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0792 - - gmx:100818189 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0792 20 6850904 6856756 Lan4g1270 4 21325712 21332184 LSH