Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0762 ATGGGGACCGAGCTCATGAGAATATGTGTTAATGAAGATAGTGATGACTTTCCATCTGTCCCACCAGGATTTGAGTCATATACAGCTTTCTCACTGAAGAGGGTTGATGACAATGAGAAACAAAATGATAAGAATATGACCAGCTGTTCAGCCTCTACTGGTGCTTCTGAATCACAGTCCACTAAGGTGGAAACTGATGTCCATGTTAGTGATACTGCAAAGGTTCCTAGGACTCTTCGACGAAGACCATGGATTAACCATGGGCGATATGAGAATAGTTCGGAGGAAGACTCTGATTCTGTGTGCTGTGATCAAAACTTCTCCTCGAGACCTTGTCTACCTAGGGGAGTTATCCGTGGATGTCCCGATTGCAGTAATTGCCAAAAGGTTGTTGCCAGATGGCGACCAGAAGATGCTCGCAGGCCAAATATCGAGGATGCTCCTGTTTTCCACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGAGCTGAACCATATGGAATTTGTCGCATTGTTCCCCCATCTTCTTGGAAACCTCCTTGTCCTCTCAAGGAAAAAAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGGTTCAATTAGAAAGATGTCAAGGATTCAAAGTAATACAAAAAGGAAAAGGAGAAGATGCACAAGAATGGGAGTGGAAAATGGCATCGGAAATGTGGGATTTTGCGAGGCTGAAAGTTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATTCGGACGATTTTAAGACCAAATACTTCAGAAAATATGAGAATGTAGAGCACTGCGGAGCAAATACAACAATTTCAAATGGCACTTCAGAGCCGTCTGTGGAGAACATTGAGGGTGAATATTGGCGGATGGTTGAGAGTCCTACTGAAGAAATTGAGGTTCTTTATGGAGCTGATCTGGAAACTGGGGTTTTTGGCAGTGGTTTTCCTAGAAAGCATAGTAATGCTTTTGCTTCACATGAACAATACATCAAATCTGGCTGGAATTTAAATAACTTCGCTAGGCTACCTGGATCTCTACTCTCTTATGAGAGCAGCGATATATCTGGTGTTTTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCACCACTTATATTCATTGAATTATATGCATTGGGGTGCTCCAAAACTGTGGTATGGTGTCCCTGGAAAAGATGCTTGTAAATTGGAAGAGGCCATGAGAAAGCATATGCCTGAGCTTTTTGAGCAACAACCTGACTTGCTTCATAAACTGATCACCCAACTTTCTCCTTCCATCCTCAAGTCTAAAGGAGTTCCAGTTTATAGATGTGTCCAAAACCCTGGAGAGTTTGTTCTTACTTTTCCTCGAGCCTACCACTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCTCATGGGCATGTTGCTATAGAGCTGTACCGGGAGCAGGGGCGCAGAACTTCTATATCCCATGACAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTAAGAGCCCAGTGGGAGCTTAATTTGCTGAAGAAGAATTCTTTGGACAATCTACGATGGAAAGATGTCAGTGGAAAGGATGGCCTTCTGGCAAAAGCGCTGAAGGCACGTGTTGAGATGGAACGGGCAAGAAGGGAATTTCTTTGTAGCTCTTCAAGGGCATCGAAAATGGAGAGTAGTTTTGATGCTACAAGTGAAAGGGAATGCATTGTTTGCCTTTTTGATTTACACCTCTCTGCAGCCGGTTGTTGCTGTTCCCCAAATAGATATGCTTGCTTGGATCATGCAAAGCAATTTTGTTCTTGCACATGGGATTCCAAATTCTTCCTCTTTCGTTATGATATTAGTGAACTAAATATTCTTGTTGAGGCACTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCGAAATTAGATCTTGGTCTGGCACTAACTTCTCATGTCTTGCCAGGCAAGGCAACAATACACAAGGAATTGAGTTCGGATTCATCAAATTTGTCTCATTATTCCAGGGGTATTGTGCATAAAGAGGTAGCTTTGCATCCATCAAATAAATTTATTGATGATTCCTGTTCGACAGATGTCCCAATAGATAATCAAACACGTGCAGCGAAAAGTAAAGATCAGAGCTATCTTCAACAGAGGAAATCAGCAGAAGCCGTGTCTTCAATTCACACGAAGCATTTGTTAACAACTAATAGCTCAAAACCTACATGTGAGATGGCTAATCATAAGAACTCTGTTAATAAAGAAGGATCTCTTATTTGCGGATCAAAGATGAGAACCCCCGGTTGTCAATTTTCTCAAAAGGACCTGTCAGGTGAGAAAAGTTCACTTTACAGACATGACAATGTGATACTTCTTAGTGATGATGAAGGTGATGAAATTAAGATGGCAGATTCAAATAGAAGGAAGGAAAGTTCTCGTATGGTTACAGGTTCTAGAGATAAAGCAAGCCCATGTAACAATATAGAAAATACCAACTTGATCATCCCTGTGACAGATGCTGCTGTGATGGGTGAAAAGAATGGTCATACATTGCCTCGTGGAGATATGCGTTCTGGTTCAGCTCAGCTTTTGCACGTGAAACAGGAATGTCATGAAAACAGAGGACCAAATCTTGCTTTTGCCTCTGTAAATCTTAACTGTCATATAGGTCATACAACTGAAGAATCAGTTAGAAATATTCGAGCTTCTTCAGCAGGAGAGGCCAGCCATCATTGTTTGGAAAGTTCAGATAATTCACCTCTGAAGCCACAACAGTCTGGCACTACCAAGGCCAAGAATGAGGATATTCATGAAAAGCTTGGAGAATGTGCCACTTCTAATGTAGCTGACAACGTAAAAGCTGTTAATGTAAACCTTTCTTGCAGTCTAAACAATTTCGAAAGGAATTCCCATCAGAAAGGTCCTCGTATTGCCAAGGTTGTTCGGCGTATCAACTGCAATGTTGAACCTTTAGAATTTGGAGTTGTGCTTCCTGGAAAGTCATGGTGCAGCAGTCAGGCTATATTCCCAAGGGGATTTAAAAGCCGTGTTAGGTACATAAGTGTTTTAGATCCATCCAGTACTATGTGTTATTATATTTCAGAAATTCTTGATGCTGGACGTGCTGGACCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAGCGAGGTTTTCGTTCATGTTTCACCTGCAAGATGCTGGGAACTTGTAAGAGAGAGAGTGAATCAAGAGATTGCAAAACAACACAAGCTGGGAAAAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCGTCTCCAGCTATAGTGCAGGCAATTGAGGCACTAGATCGAAGTCGAGTTTGTAATGAATATTGGGACTCCCGACCCTACTCCCGCCCTCAAGGGCAGATTTCACGACCCCACCAAACCAATATAAATGGTGGAAATGGTGCAGGAGTCCTCATAAATCAGCACTTGCCCATTGGAGTTGTTGCAATACTAAGAAACCTATTTAAAAAAGCCAATCCCGAAGAATTGAACTCATTGTACACCATTCTTAGTGACAATAAGTCAGCAACTGGCCAGATGCAAATTGCGCAACTTCTCAATGAAGAGATTCACAACTCAAAAGTTCACAACCCTCCTAGGTGA 3765 0.4223 MGTELMRICVNEDSDDFPSVPPGFESYTAFSLKRVDDNEKQNDKNMTSCSASTGASESQSTKVETDVHVSDTAKVPRTLRRRPWINHGRYENSSEEDSDSVCCDQNFSSRPCLPRGVIRGCPDCSNCQKVVARWRPEDARRPNIEDAPVFHPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSIWEGSKFATRVQRIDKLQNRGSIRKMSRIQSNTKRKRRRCTRMGVENGIGNVGFCEAESFGFEPGPEFTLETFQRYSDDFKTKYFRKYENVEHCGANTTISNGTSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGVFGSGFPRKHSNAFASHEQYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDACKLEEAMRKHMPELFEQQPDLLHKLITQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHVAIELYREQGRRTSISHDKLLLGAAREAVRAQWELNLLKKNSLDNLRWKDVSGKDGLLAKALKARVEMERARREFLCSSSRASKMESSFDATSERECIVCLFDLHLSAAGCCCSPNRYACLDHAKQFCSCTWDSKFFLFRYDISELNILVEALEGKLSAVYRWAKLDLGLALTSHVLPGKATIHKELSSDSSNLSHYSRGIVHKEVALHPSNKFIDDSCSTDVPIDNQTRAAKSKDQSYLQQRKSAEAVSSIHTKHLLTTNSSKPTCEMANHKNSVNKEGSLICGSKMRTPGCQFSQKDLSGEKSSLYRHDNVILLSDDEGDEIKMADSNRRKESSRMVTGSRDKASPCNNIENTNLIIPVTDAAVMGEKNGHTLPRGDMRSGSAQLLHVKQECHENRGPNLAFASVNLNCHIGHTTEESVRNIRASSAGEASHHCLESSDNSPLKPQQSGTTKAKNEDIHEKLGECATSNVADNVKAVNVNLSCSLNNFERNSHQKGPRIAKVVRRINCNVEPLEFGVVLPGKSWCSSQAIFPRGFKSRVRYISVLDPSSTMCYYISEILDAGRAGPLFMVSLENCPSEVFVHVSPARCWELVRERVNQEIAKQHKLGKKGLPPLQPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPQGQISRPHQTNINGGNGAGVLINQHLPIGVVAILRNLFKKANPEELNSLYTILSDNKSATGQMQIAQLLNEEIHNSKVHNPPR* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0762 1254 SMART JmjN_1 146 187 IPR003349 -
Lan20g0762 1254 Pfam F/Y rich C-terminus 1078 1162 IPR003889 GO:0005634
Lan20g0762 1254 MobiDBLite consensus disorder prediction 839 862 - -
Lan20g0762 1254 Pfam C5HC2 zinc finger 608 658 IPR004198 -
Lan20g0762 1254 MobiDBLite consensus disorder prediction 934 965 - -
Lan20g0762 1254 Pfam JmjC domain, hydroxylase 385 501 IPR003347 -
Lan20g0762 1254 Gene3D - 1022 1160 - -
Lan20g0762 1254 Coils Coil 565 585 - -
Lan20g0762 1254 ProSiteProfiles FYR domain FYRC motif profile. 1076 1166 IPR003889 GO:0005634
Lan20g0762 1254 Pfam F/Y-rich N-terminus 1027 1071 IPR003888 GO:0005634
Lan20g0762 1254 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Lan20g0762 1254 SUPERFAMILY Clavaminate synthase-like 349 545 - -
Lan20g0762 1254 MobiDBLite consensus disorder prediction 35 74 - -
Lan20g0762 1254 ProSiteProfiles FYR domain FYRN motif profile. 1015 1074 IPR003888 GO:0005634
Lan20g0762 1254 MobiDBLite consensus disorder prediction 934 969 - -
Lan20g0762 1254 PANTHER JUMONJI 14-RELATED 988 1246 - -
Lan20g0762 1254 PANTHER JUMONJI 14-RELATED 74 777 - -
Lan20g0762 1254 Gene3D Cupin 132 502 - -
Lan20g0762 1254 SMART cupin_9 355 518 IPR003347 -
Lan20g0762 1254 SMART fyrc_3 1080 1174 IPR003889 GO:0005634
Lan20g0762 1254 MobiDBLite consensus disorder prediction 44 66 - -
Lan20g0762 1254 Pfam jmjN domain 148 181 IPR003349 -
Lan20g0762 1254 PANTHER LYSINE-SPECIFIC DEMETHYLASE 988 1246 - -
Lan20g0762 1254 PANTHER LYSINE-SPECIFIC DEMETHYLASE 74 777 - -
Lan20g0762 1254 SMART fyrn_3 1029 1074 IPR003888 GO:0005634
Lan20g0762 1254 ProSiteProfiles JmjC domain profile. 355 518 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0762 Lan-Chr20 6346117 6355632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0762 1 1248 JUMONJI Transcription Factor Family AT1G08620 54.836 0.0 1259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan20g0762 JmjC 3.8e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0762 - - lang:109345364 2140.54