Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0754 ATGAAGACAATAGTAGAGGATGAAAACGACGTCGTTTTGGCTCCACCAGCAAATTTTTCAATGGTTGAGGAAAGCATTTACCGTTCAAGCTTCCCTCGACCTTGCAATTTCCCCTTTCTCCAAACCCTAAATCTTCGATCCATCATATACTTGTGCCCTGAACCCTATCCACAGCAAAATTTGGACTTTCTTCAATCACAAAATATTCAACTCTTTCAATTTGGGATTGAGGGCAAGACGGATCTTTCTGTATCTACTGTTAATGATACTATAATGGAGTCTCTCAAAGTTTTAATTGATGTGAGAAATCATCCGGTTTTGATTCACTGCAATCGTGGGAAGCATCGAACTGGTTGTCTTGTTGGTTGCTTAAGAAAATTTCAGAATTGGTGCTTGACTTATATATTTGAAGAGTACAAGCAATTTGCAGGTGCTAAATCAAGGAATACAGATTTGAATTTCATAGAAACATTTGACACTATAAGCTTGAGGCAGTGCCTTTTCAGCATCATATATCAGTACCAAGGATATGCCTCCAAAAAACAACGTTTGATGTATAAAGATGATAATTTACAAAAGCCTCAATTGGCATCAGCATAG 600 0.375 MKTIVEDENDVVLAPPANFSMVEESIYRSSFPRPCNFPFLQTLNLRSIIYLCPEPYPQQNLDFLQSQNIQLFQFGIEGKTDLSVSTVNDTIMESLKVLIDVRNHPVLIHCNRGKHRTGCLVGCLRKFQNWCLTYIFEEYKQFAGAKSRNTDLNFIETFDTISLRQCLFSIIYQYQGYASKKQRLMYKDDNLQKPQLASA* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0754 199 Pfam Tyrosine phosphatase family 15 160 IPR004861 -
Lan20g0754 199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 158 IPR029021 -
Lan20g0754 199 CDD PFA-DSP_Siw14 13 159 - -
Lan20g0754 199 ProSitePatterns Tyrosine specific protein phosphatases active site. 108 118 IPR016130 GO:0016311|GO:0016791
Lan20g0754 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE 7 182 - -
Lan20g0754 199 PRINTS Plant and fungal dual specificity phosphatase signature 13 30 IPR020428 GO:0016791
Lan20g0754 199 PRINTS Plant and fungal dual specificity phosphatase signature 50 63 IPR020428 GO:0016791
Lan20g0754 199 PRINTS Plant and fungal dual specificity phosphatase signature 69 83 IPR020428 GO:0016791
Lan20g0754 199 PRINTS Plant and fungal dual specificity phosphatase signature 86 100 IPR020428 GO:0016791
Lan20g0754 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP5 7 182 - -
Lan20g0754 199 Gene3D Protein tyrosine phosphatase superfamily 12 162 IPR029021 -
Lan20g0754 199 ProSiteProfiles Dual specificity protein phosphatase domain profile. 18 167 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0754 Lan-Chr20 6244272 6246038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0754 5 199 Protein tyrosine phosphatase (PTP) family AT3G02800 65.128 4.10e-100 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0754 K18045 - qsu:112008997 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0236 8 4386548 4388471 Lan20g0754 20 6244272 6246038 LSH