Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0753 ATGGAATTTCATCCTCCTATTCCTATTCCTATTTCACACTTAGATGCACAGTGGCAAATCAAATCGATATCCAGTGAAACAATGGAAGCTGGAGTTTATCCAGAGCGTCCTGGAGAGCCAGATTGTTCATATTACATCAGAACAGGCCTATGTAGATTTGGTGTAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCAACGGCAAGGATGAAAGGCGAGTTCCCAGAAAGAATTGGGCAACCAGAATGTCAGTACTATTTGAAGACGGGAACTTGCAAATTTGGAGCTACATGCAAGTTTCATCATCCAAGAGAGCAGGCTGGAAGTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCGCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTAAGAACAGGACAGTGTAAATTTGGGAACACTTGCAAATTCCACCATCCTCAACCAAGTAATATGGTTCTTTCATTAAGGGGTTCTCCTGTTTATCCTACTGTCCAATCTCCAACCGCACCAGGTCAGCAATCATATGCTGGAGGAATTGCAAATTGGTCAAGAGCATCTTATATTGCTAGTCCACGCTGGCAAGGCCCTTCAAGTTATACACCTTTAATTCTACCTCAAGGAGTGGTCTCAGTGCCTGGGTGGAGTGCATACAGTGGCCAAATGAGATCAATCTCTGCTTCCGATAGTCCACAACAAATAATAGGAAATGATCAGACATATGGAACTTCTCGCCAAGATGAAGTAACAAATTCAGGATCACAAGGGGAATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGGTTTTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGGTCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCAGTCTGTCGCTTCCACCATCCGCGTGAGAGGCTGATTCCTGTTCCCGACTGTGTCTTGAGTCCAATAGGCCTTCCTTTGCGTCCTGGAGAGCCATTGTGTGTTTTCTATTCGCGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAATTTGACCACCCAATGGGAATCTTCACCTATAATTTATCTGCATCGCCTTCAGCTGAGGCCCCTGGCCGGGGTCTGTTAGGTTCTTCATCAGGAACAGCTGCATTAAATTTATCATCAAGACCTGCTGAATCAGGATCATCAAAGCCCAGGAGGCTTTCAATATCAGAGACAAGACAGATTCCTTCCGGTGATGATGACATTGATGATGAGGGATGA 1284 0.4447 MEFHPPIPIPISHLDAQWQIKSISSETMEAGVYPERPGEPDCSYYIRTGLCRFGVTCRFNHPPNRKLAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPREQAGSAGRVALNTLGYPLRPNEPECTYYLRTGQCKFGNTCKFHHPQPSNMVLSLRGSPVYPTVQSPTAPGQQSYAGGIANWSRASYIASPRWQGPSSYTPLILPQGVVSVPGWSAYSGQMRSISASDSPQQIIGNDQTYGTSRQDEVTNSGSQGEYSQFRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPVPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNLSASPSAEAPGRGLLGSSSGTAALNLSSRPAESGSSKPRRLSISETRQIPSGDDDIDDEG* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0753 427 MobiDBLite consensus disorder prediction 377 427 - -
Lan20g0753 427 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Lan20g0753 427 SMART c3hfinal6 288 315 IPR000571 GO:0046872
Lan20g0753 427 SMART c3hfinal6 81 108 IPR000571 GO:0046872
Lan20g0753 427 SMART c3hfinal6 36 63 IPR000571 GO:0046872
Lan20g0753 427 SMART c3hfinal6 127 154 IPR000571 GO:0046872
Lan20g0753 427 SMART c3hfinal6 334 361 IPR000571 GO:0046872
Lan20g0753 427 SUPERFAMILY CCCH zinc finger 337 361 IPR036855 GO:0046872
Lan20g0753 427 MobiDBLite consensus disorder prediction 232 267 - -
Lan20g0753 427 Gene3D - 113 161 - -
Lan20g0753 427 MobiDBLite consensus disorder prediction 385 416 - -
Lan20g0753 427 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 13 426 - -
Lan20g0753 427 Gene3D - 34 112 - -
Lan20g0753 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Lan20g0753 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 154 IPR000571 GO:0046872
Lan20g0753 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 290 315 IPR000571 GO:0046872
Lan20g0753 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 38 63 IPR000571 GO:0046872
Lan20g0753 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 336 361 IPR000571 GO:0046872
Lan20g0753 427 SUPERFAMILY CCCH zinc finger 130 155 IPR036855 GO:0046872
Lan20g0753 427 PANTHER PROTEIN PHOSPHATASE RELATED 13 426 - -
Lan20g0753 427 ProSiteProfiles Zinc finger C3H1-type profile. 288 316 IPR000571 GO:0046872
Lan20g0753 427 SUPERFAMILY CCCH zinc finger 41 64 IPR036855 GO:0046872
Lan20g0753 427 SUPERFAMILY CCCH zinc finger 292 318 IPR036855 GO:0046872
Lan20g0753 427 ProSiteProfiles Zinc finger C3H1-type profile. 36 64 IPR000571 GO:0046872
Lan20g0753 427 Gene3D - 280 363 - -
Lan20g0753 427 ProSiteProfiles Zinc finger C3H1-type profile. 81 109 IPR000571 GO:0046872
Lan20g0753 427 ProSiteProfiles Zinc finger C3H1-type profile. 334 362 IPR000571 GO:0046872
Lan20g0753 427 SUPERFAMILY CCCH zinc finger 85 110 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0753 Lan-Chr20 6233340 6240837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0753 18 426 C2H2 Transcription Factor Family AT3G02830 62.679 1.57e-176 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan20g0753 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0753 - - lang:109354276 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0237 8 4400166 4407037 Lan20g0753 20 6233340 6240837 LSH