Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0732 ATGTGTTCAATAGTTAACAACCAATACGAGTTGTGTGAAGAAATCGGTCGTGGTCGTTTCGGAACCATCTTCCGTTGTTTCAACCCAACCACTAACCAAGTCTTTGCTTGCAAAATCATCAACAAAACCCTCTTAACCGATTCAACCGATCGTAACTGTCTCCTTAACGAACCCAAATTCATGACCCTCCTTTCTCCACACCCTAACATCCTCCAAATCTATCACTTCTCCGAAGACGACGACGTTTTATCCATCGTTATGGAACTTTGTCAGCCTCTAACCTTATTCGAAAGAATTCTCAAAACCAATGGTTCTAATACTTTAACGGAGCCACAATCAGCTTTCATCATGCATCAGCTTCTTTCAGCTTTAGCCCATTGCCACCGTCTCGGTGTGGCGCATCGTGATATCAAACCAGACAACATCCTTTTCGATTCGAGGGACAACCTTAAACTAGCGGATTTTGGTTCCGCTGAGTGGTTCGGTGAGGGGAAGAAGATGAGTGGGATCGTTGGAACGCCGTATTATGTGGCGCCGGAGATTTTGATGGGGAGAGAGTATGATGAGAAGGTTGATGTTTGGAGCTGTGGTGTTATTTTGTATATAATGTTGTCTGGGATTCCACCGTTTTATGGTGATGATGCTGCTCAGATTTTTGAGGCTGTTGTTAGGGGTAATCTTAGGTTTCCTTCAAGGTTGTTTAGGTCTGTGTCCTCTTCTGCTAAGGATCTATTGAGGAAGATGATTTGTAGGGATGTTTCTAGAAGATTCTCTGCTGAACAAGCCTTGAGGCATCCTTGGATCTTGAGTGGAGGAGAGACAGCTGATCTGAGTTGA 837 0.4409 MCSIVNNQYELCEEIGRGRFGTIFRCFNPTTNQVFACKIINKTLLTDSTDRNCLLNEPKFMTLLSPHPNILQIYHFSEDDDVLSIVMELCQPLTLFERILKTNGSNTLTEPQSAFIMHQLLSALAHCHRLGVAHRDIKPDNILFDSRDNLKLADFGSAEWFGEGKKMSGIVGTPYYVAPEILMGREYDEKVDVWSCGVILYIMLSGIPPFYGDDAAQIFEAVVRGNLRFPSRLFRSVSSSAKDLLRKMICRDVSRRFSAEQALRHPWILSGGETADLS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0732 278 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Lan20g0732 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lan20g0732 278 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan20g0732 278 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 276 - -
Lan20g0732 278 Gene3D Transferase(Phosphotransferase) domain 1 94 276 - -
Lan20g0732 278 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2 5 276 - -
Lan20g0732 278 ProSiteProfiles Protein kinase domain profile. 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0732 278 SUPERFAMILY Protein kinase-like (PK-like) 4 270 IPR011009 -
Lan20g0732 278 CDD STKc_CAMK 8 267 - -
Lan20g0732 278 SMART serkin_6 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0732 278 Pfam Protein kinase domain 9 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0732 278 PIRSF ILK 2 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0732 Lan-Chr20 6039610 6041295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0732 9 276 EF-hand Containing Proteins AT1G50700 41.697 6.48e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan20g0732 Pkinase 1.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0732 - K08794 gmx:548089 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0256 8 4604327 4605959 Lan20g0732 20 6039610 6041295 LSH