Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0729 ATGGCAGCACCTTCTTCTTCAACATCGCAATCGCACTTCACCTATTCCAACAACGCCTCCTCCTCCTACTTCCCCGTTCCATTTCACCTTCAGCAACACTCAACCACGCACTACACTGCACCCTACATTCCCCCGCCGGTGCAAATCCCTGTTCCTCCGGTTATCGGTCCCGTTCCTCCGGTACCGGTTGCCGCCGTGTATTCCGTGCCTCAGTATCCGGCACATCACTTGTTTGAGCGAGATGCACAGATAATAACACCAGAGGCTCTTGAGAGCGTTAAGGCAGCAATTGCAAGCAGCGAGGTTGAGAATAAAGCTGACGCCAAAAAGAAAGCGATTCCTCGCAAAGCTGGTGGTCAAACTTGGGAGGATCCTGTTCTCGCTGAGTGGCCAGAAGATGATTATCGGCTTTTTTGTGGTGATCTTGGTAATGAAGTGAATGATGATGTTCTTTCAAAAGCATTCTCACGATTCCCTTCCTTTAACATGGCACGGGTTTCCCTCATCTTGCTCATTATTCGCAAATCAAGGGCAATTGAAATTGTTGTCAGAGACAAGCGGACTGGTAAAACAAAGGGTTATGGATTTGTAAGCTTTGCCAGTCCTTCCGACCTTGCTGCCGCACTTAAAGAAGTGAATGGTAAATATGTTGGAAATCGGCCAATAAAGTTACGCAAGAGTAAGTGGAAGGAGAGAACAGATCTCGAGGCCCTGGAAAAACAGAAGAACCAAAATCTGAAGAAATCAAAACTTCCCAGGAAGGGTGTTCTGCACAAGTGA 780 0.4756 MAAPSSSTSQSHFTYSNNASSSYFPVPFHLQQHSTTHYTAPYIPPPVQIPVPPVIGPVPPVPVAAVYSVPQYPAHHLFERDAQIITPEALESVKAAIASSEVENKADAKKKAIPRKAGGQTWEDPVLAEWPEDDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVSLILLIIRKSRAIEIVVRDKRTGKTKGYGFVSFASPSDLAAALKEVNGKYVGNRPIKLRKSKWKERTDLEALEKQKNQNLKKSKLPRKGVLHK* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0729 259 Gene3D - 78 225 IPR012677 -
Lan20g0729 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 229 IPR000504 GO:0003723
Lan20g0729 259 SMART rrm1_1 136 225 IPR000504 GO:0003723
Lan20g0729 259 MobiDBLite consensus disorder prediction 240 259 - -
Lan20g0729 259 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 37 166 - -
Lan20g0729 259 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 182 259 - -
Lan20g0729 259 PANTHER RNA-BINDING PROTEIN 42-LIKE 182 259 - -
Lan20g0729 259 PANTHER RNA-BINDING PROTEIN 42-LIKE 37 166 - -
Lan20g0729 259 SUPERFAMILY RNA-binding domain, RBD 122 232 IPR035979 GO:0003676
Lan20g0729 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 223 IPR000504 GO:0003723
Lan20g0729 259 CDD RRM_RBM42 129 227 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0729 Lan-Chr20 6013732 6017062 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0729 137 241 Eukaryotic Initiation Factors Gene Family AT1G22760 28.972 6.94e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0729 K25079 - gmx:100800281 335.495