Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0726 ATGATGAGGGCTCCTTGCTGTGATAAAATGGGATTGAAGAAGGGACCTTGGACACCAGAAGAAGATCATATACTGATTACTCATATTCAAAGATATGGTCATCAAAATTGGCGTGCCCTTCCAAAACAAGCTGGTTTGTTAAGGTGCGGTAAAAGTTGTAGACTTCGATGGATAAATTACTTGAGGCCAGATATTAAACGAGGTAATTTCAGCAATGAAGAAGAAGAGACAATCCTCAAGCTACATGGAATTCTTGGAAATAAATGGTCTGCTATTGCGGCGAGATTACCAGGTCGAACCGATAATGAAATAAAGAATTTTTGGTATACTCATTTGAAGAAGAGGGCTGAGAGAAGCCAAATGCACAGTATGAGTAATAGCACCTCATGTCCCTTACAAAAGGCACAAGCAACTTGTAGTTCAGAGGCTCAAATAAGGATGCCACAAGTAGCAGCAGATGCATCAAATGCTACTACTTCAAATGCCTCTAATGGTTGCAATGAGATTGATGAAGAAATGGAATTTTGGTACAATCTATTCATCCAAACAGGACAGTAG 558 0.3961 MMRAPCCDKMGLKKGPWTPEEDHILITHIQRYGHQNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSNEEEETILKLHGILGNKWSAIAARLPGRTDNEIKNFWYTHLKKRAERSQMHSMSNSTSCPLQKAQATCSSEAQIRMPQVAADASNATTSNASNGCNEIDEEMEFWYNLFIQTGQ* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0726 185 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan20g0726 185 CDD SANT 69 112 IPR001005 -
Lan20g0726 185 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 183 - -
Lan20g0726 185 CDD SANT 16 61 IPR001005 -
Lan20g0726 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan20g0726 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan20g0726 185 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan20g0726 185 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan20g0726 185 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan20g0726 185 Gene3D - 13 66 - -
Lan20g0726 185 PANTHER MYB TRANSCRIPTION FACTOR 1 183 - -
Lan20g0726 185 SMART sant 66 114 IPR001005 -
Lan20g0726 185 SMART sant 13 63 IPR001005 -
Lan20g0726 185 Gene3D - 69 142 - -
Lan20g0726 185 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0726 Lan-Chr20 5977196 5978582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0726 1 119 MYB Transcription Factor Family AT2G31180 77.311 1.88e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g0726 Myb_DNA-binding 3.6e-14 CL0123