Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0716 ATGGGGACTCCTGTGAATATTATTGTGGGTTCTCATGTGTGGATTGAAGACCCAGAGGTATCTTGGATTGATGGACAGGTATCAAAAATCAATGGAAAAGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTTGTTGCAAATTTATCAAAAATACTTCCCAAAGATATGGAAGCTCCTCCTGGTGGAGTGGATGATATGACTAAGCTGTCCTATTTGCATGAACCTGGAGTCCTTCAGAACTTAAAAATTAGATACGAATTGAATGAGATATATACTTATACTGGAAATATTCTGATTGCAATAAATCCATTCCAAAGACTACCTCATATTTATGGAGCGCACATGATGCACCAATATAAGGGAGCACCATTTGGAGAATTAAGTCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGAGCGATGATTCATGAAGGAAAAAGTAATTCAATTCTGGTCAGTGGAGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAATACCTTGCTTTCTTAGGTGGTAGGGCTGCAACTGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAACCCAGTTCTGGAAGCATTTGGCAATGCTAAAACTGTCAGGAATAATAATTCTAGTCGGTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCTATCCGAACTTACCTTCTAGAGAGATCCCGGGTTTGCCAAGTTAATGATCCCGAGCGCAACTACCATTGCTTTTATCTTCTTTGTAATGCACCACAGGAGGAAGTTGAGAAATACAAATTAGGAAATCCTAGATCATTTCACTACCTTAACCAGTCAAAGTGCTATGAACTGGCTGATATAAGTGATGCTCGTGAGTATCTTGCCACCCGGAGAGCAATGGATATTGTTGGAATAAGCCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCGATTCTTCATATTGGTAATATTGAATTTACCAAAGGAAAGGAGGCTGACTCTTCAATTCCAAAAGATGACACAGCCAAATTCCACTTGAAAACAACTGCTGAGCTTCTCATGTGTGATATTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATAACCCCTGAAGAAGTTATAAAACGGAGCCTTGATCCCCAAAGTGCAGCAGTCAGTAGAGATGGATTGGCAAAAACAATTTATTCTCGTCTGTTTGACTGGTTGGTGGACAAGATTAACAATTCAATCGGACAAGACCCTAATTCTAAATGTTTGATTGGAGTCCTTGATATCTATGGTTTTGAAAGCTTTAAAACCAACAGTTTTGAACAGTTTTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGCATGTGTTTAAAATGGAACAAGAAGAATATACCAAGGAGCAAATTGATTGGAGCTACATTGAATTTGTTGACAACCAAGATGTTCTGGACCTTATTGAAAAGAAACCCGGAGGAATCATTGCACTCCTCGATGAAGCTTGCATGTTTCCAAAGTCAACACACGAAACATTTGCGAATAAGCTTTATCAAACATTTAAAGTTCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACGGATTTCATTGTTGCTCATTATGCTGGGGAGGTGACATACCAGTCTGACCAATTTTTAGACAAAAACAAGGATTACGTGGTTCCTGAACATCAAGATTTATTGGGTGCTTCCAAATGTTCTTTTGTAGCTGGCCTTTTCCCCCCACTTCCAGAAGAGTCGTCAAAATCTTCCAAATTTTCTTCAATTGGCTCGCGCTTTAAGTTACAACTACAGCAACTAATGGAAACATTGAATTCTACAGAACCCCATTACATTAGATGCGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATATGAACATTATGCAACAACTTCGCTGTGGTGGCGTGTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTCCTTTCTTTGATTTTGTAAATAGATTTGGCCTCCTTGCCTCTGAGGCCATGGAAGCAAATTATGATGAAAAGGCTGTTTGCAAGAAGATTCTGGATAAGATGGGTCTTAAAGGATATCAGATTGGAAAAACAAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAACTAGATGGACGGAGAGCTCAAGTACTTAGTAATGCAGCAAAATCTATTCAACGGCGTGTACGGACCCATCAAGCTCGTAGACATTATCTTGCATTGCGAAAGAAGACCATATATGTGCAGTCTCGTTGGAGAGGGAGACTTGCTTGTAAACTCTATGACGGCTTGAGAAGGGAGGCTGCTGCTAAGAAAATTCAAAAGAATGTACGCAGACATGAAGCTAGGAAAGCCTATAAAGAACTTCATGTGGCAGCACTTTCATTGCAAACAACTTTAAGAGCAATTGCTGCTCGTAAGGAGTTCAGGTTTAGGAAGCAGACTAAAGCTTCCATCATTATTCAGGCTCAGTGGCGAAGACACAAGGCTGCCTTATATTATAAGAGGCTCAAGAGGGGTACAGTTGTTACACAATGCAGATGGAGAGGGCGTGTGGCCAGGAGAGATCTTAGGAAACTGAAAATGGCTGCAAAGGAAACTGGCGCACTTCAAGAAGCAAAGGATAAGCTTGAAAAACGAGTGGAGGAACTCACTTGGCGCCTCCAACTAGAAAAAGGTTTAAGGACCAATGTGGAAGAATCCAAAGCCCAAGAGATAGCAAAAATGCAGAATTTATTACAGGAGATGCAGAGCAAACTTGATGAAACCAATGCTCTGCTCGTCAAGGAGCGAGAGAATGCAAAGAAAGTTGTCGAAGAAGCACCTCCTGTTATTAAAGAAACTCAGGTTGTTATTGAAGATACACACAAGCTTGAGGCACTAACAGCAGAAATTGAGAGCCTAAAGACTTCATTCGCGTCAGAGAAGCAGAAAGCTGATGACTTTGAAAAAAAATATAATGAAGCTCAGGTTTGTAGTGAAGAAAGGGGTAAAAAAATAGAAGACTTGGAGAAGAAGGTTCGTCAGCTCCAAGAATCATTGACCAGGCTTGAGGAGAAGAATAGTAATATAGAGTCGGAGAATCAGGTTCTACGTCAACAAGCTGTATCTATGGCAGCTGCACCTGCTAAGCTCCTTTCAGGACGGTCCAGATCAATTATCCAGAGAGGTGCTGAAAGTGGCCATATTCCAGTGGAAGCAAAGACACCTTCGACCAATCAGGAACTGCATCAGAGCCCATCAATGAGCCAGAGGGAATCCTCTGAAGTGGATGATAAACCCCAAAGGTCACTAAATGAGAAACAACAAGAGAATCAAGAGTTACTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGGAACAGACCAATTGCTGCCTGTATCATATACAAATGTCTCTTGCATTGGAGATCATTTGAAGTTGAGCGTACTAGCGTTTTTGATCGTATCATTCAAACTATTGGCCATGCAATTGAGACTCAGGATAACAATGACGTGTTGGCTTATTGGTTATCCAATGCCTCAACACTTCTCTTGTTACTCCAACGCACACTCAAGGCAAGTGGTGCTGCTGGGATGGCTCCACAACGCCACCGCCGTTCTTCGTCAGCAACTCTATTTGGGAGGATGACTCAAAGTTTCCGTGGAACTCCAACAGGAGTCAATCTTTCCCTAATCAATGGTAGCTCGAGCAGAGGGGTAGAAACATTAAGACAAGTTGAAGCCAAATACCCAGCTCTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATCCGTGATAACTTAAAGAAAGAAATTTCACCCCTGCTTGGTTTATGCATCCAGGCACCAAGAACATCCAGAGCAAGCTTGGTTAAGGGATCATCACGTTCTGTCGCAAACACTGAAGCCCAGCGCACCTTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTAGGGAACTTCTTAAATACTTTGAAAGAAAATCATGTCCCCCCATTTTTGGTTCGCAAAGTTTTCACACAAATTTTTTCTTTCATCAATGTACAATTATTTAATAGTCTTCTACTAAGACGAGAGTGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGTTTAGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCTGGTTCAGCTTGGGATGAGCTCAAACATATTAGACAGGCTATTGGATTTCTGGTCATACATCAGAAACCAAAGAAAACCCTGGATGAAATAAGTCATGATCTGTGCCCAGTCCTTAGTATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAGTATGGCACGCATAGTGTCTCCCCTGATGTCATTTCCAATATGAGAGTATTGATGACTGAGGATTCAAATAATGCAGTTAGTAATTCTTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAGTCCATGGAACAGATAGATATCGCGGACATAGATCCCCCGCCACTAATTCGTGAAAACTCAGGCTTTAGCTTTTTGTTGCCACGCCCAGATTGA 4614 0.4109 MGTPVNIIVGSHVWIEDPEVSWIDGQVSKINGKDAEIETTNGKKVVANLSKILPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHIYGAHMMHQYKGAPFGELSPHVFAVADVAYRAMIHEGKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQVNDPERNYHCFYLLCNAPQEEVEKYKLGNPRSFHYLNQSKCYELADISDAREYLATRRAMDIVGISQKDQEAIFRVVAAILHIGNIEFTKGKEADSSIPKDDTAKFHLKTTAELLMCDIDALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKCLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFANKLYQTFKVHKRFIKPKLSRTDFIVAHYAGEVTYQSDQFLDKNKDYVVPEHQDLLGASKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENMNIMQQLRCGGVLEAIRISCAGYPTRRPFFDFVNRFGLLASEAMEANYDEKAVCKKILDKMGLKGYQIGKTKVFLRAGQMAELDGRRAQVLSNAAKSIQRRVRTHQARRHYLALRKKTIYVQSRWRGRLACKLYDGLRREAAAKKIQKNVRRHEARKAYKELHVAALSLQTTLRAIAARKEFRFRKQTKASIIIQAQWRRHKAALYYKRLKRGTVVTQCRWRGRVARRDLRKLKMAAKETGALQEAKDKLEKRVEELTWRLQLEKGLRTNVEESKAQEIAKMQNLLQEMQSKLDETNALLVKERENAKKVVEEAPPVIKETQVVIEDTHKLEALTAEIESLKTSFASEKQKADDFEKKYNEAQVCSEERGKKIEDLEKKVRQLQESLTRLEEKNSNIESENQVLRQQAVSMAAAPAKLLSGRSRSIIQRGAESGHIPVEAKTPSTNQELHQSPSMSQRESSEVDDKPQRSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRHRRSSSATLFGRMTQSFRGTPTGVNLSLINGSSSRGVETLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQRTLIAHWQGIVKSLGNFLNTLKENHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDIADIDPPPLIRENSGFSFLLPRPD* 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0716 1537 Coils Coil 877 904 - -
Lan20g0716 1537 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Lan20g0716 1537 CDD MyosinXI_CBD 1117 1503 IPR037975 GO:0007015
Lan20g0716 1537 ProSiteProfiles IQ motif profile. 831 858 IPR000048 GO:0005515
Lan20g0716 1537 CDD MYSc_Myo11 76 720 IPR036018 -
Lan20g0716 1537 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 MobiDBLite consensus disorder prediction 1083 1102 - -
Lan20g0716 1537 Gene3D - 667 729 - -
Lan20g0716 1537 Pfam DIL domain 1356 1459 IPR002710 -
Lan20g0716 1537 ProSiteProfiles IQ motif profile. 806 835 IPR000048 GO:0005515
Lan20g0716 1537 PANTHER MYOSIN-9 6 1534 - -
Lan20g0716 1537 Coils Coil 1010 1051 - -
Lan20g0716 1537 Coils Coil 912 957 - -
Lan20g0716 1537 SMART DIL_2 1355 1462 IPR002710 -
Lan20g0716 1537 Pfam Myosin N-terminal SH3-like domain 9 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 SMART MYSc_2a 57 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 Coils Coil 975 1002 - -
Lan20g0716 1537 SMART iq_5 782 804 IPR000048 GO:0005515
Lan20g0716 1537 SMART iq_5 830 852 IPR000048 GO:0005515
Lan20g0716 1537 SMART iq_5 734 756 IPR000048 GO:0005515
Lan20g0716 1537 SMART iq_5 805 827 IPR000048 GO:0005515
Lan20g0716 1537 SMART iq_5 853 875 IPR000048 GO:0005515
Lan20g0716 1537 SMART iq_5 757 779 IPR000048 GO:0005515
Lan20g0716 1537 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Lan20g0716 1537 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Lan20g0716 1537 Gene3D - 439 623 - -
Lan20g0716 1537 PANTHER MYOSIN 6 1534 - -
Lan20g0716 1537 MobiDBLite consensus disorder prediction 1103 1117 - -
Lan20g0716 1537 Gene3D Kinesin motor domain 65 662 IPR036961 -
Lan20g0716 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 883 IPR027417 -
Lan20g0716 1537 Gene3D - 833 882 - -
Lan20g0716 1537 Gene3D - 785 832 - -
Lan20g0716 1537 Gene3D - 734 784 - -
Lan20g0716 1537 ProSiteProfiles IQ motif profile. 735 762 IPR000048 GO:0005515
Lan20g0716 1537 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lan20g0716 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 785 IPR027417 -
Lan20g0716 1537 MobiDBLite consensus disorder prediction 1074 1118 - -
Lan20g0716 1537 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Lan20g0716 1537 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Lan20g0716 1537 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Lan20g0716 1537 Pfam IQ calmodulin-binding motif 832 852 IPR000048 GO:0005515
Lan20g0716 1537 Gene3D - 252 310 - -
Lan20g0716 1537 ProSiteProfiles Dilute domain profile. 1166 1480 IPR002710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0716 Lan-Chr20 5879728 5895337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0716 1 1537 Myosins gene family AT1G54560 83.019 0.0 2684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0716 K10357 - gmx:100816792 2756.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1368 11 20937994 20967953 Lan20g0716 20 5879728 5895337 LSH
Lan9g0473 9 7041847 7052420 Lan20g0716 20 5879728 5895337 PCT
Lan19g0483 19 7097019 7118798 Lan20g0716 20 5879728 5895337 PCT
Lan20g0716 20 5879728 5895337 Lan9g0473 9 7041847 7052420 PCT
Lan20g0716 20 5879728 5895337 Lan19g0483 19 7097019 7118798 PCT