Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0712 ATGGCCGCTACTGCGCAAACCAAACCTAAGAAAACGGTGTCGTCTAAGAAGCCTCTCTCACACCCTCCCTTCGCTGAGATGATAACTGATGCGATTGCGAGTTTGAAAGAGAGAACAGGTTCAAGCCAAATTGCGATCTCGAAGTTTATAGAAGAAAAGCATAAGGATCTACCTGCAACCTTCAAGAAGCTTCTTCTCCAAAATCTGAAGAAATCTGTTGCCGCTGGTAAACTAGTTAAGGTTAAGAACTCCTTCAAGCTTGCTCCTACCGTTAAAGCTTCGGTGAAGGCTGCTTCTACCGATGATAAGAAACCTAAAACCGTAGCTAAGCCTAAAACCGTGGCTAAGCCTAAAGCCGCTACTGCATCCAAGGCTCTTGCCAAAGTTGCTGTGAAATCAAAGGCTGTTACGAAGCCTAAGGCAAAAGCTGTGTCTGCTGGTGCTAAACCGAAGGCAAAGATTGTTAAATCGCCGGCGAGGAAGAAGGTTGCTGTTAAGGCGGTGAAGAAGGCGCCGGTGAAGAGTGTGAAGAAACCTAAGAGTGTGAAATCGCCGGTGAAGAAAGTTGATGCTAAGCCGGTGAAGAAGAAGGTGGATGCTAAGCCGGCGAAGAAGGCGCCAGTGAAGAGTGTGAAGAAGACTAAGAGTGTGAAATCGCCGGTTAAAAAATTAGCGGCGAAGAAGGCTAAGAAATGA 696 0.467 MAATAQTKPKKTVSSKKPLSHPPFAEMITDAIASLKERTGSSQIAISKFIEEKHKDLPATFKKLLLQNLKKSVAAGKLVKVKNSFKLAPTVKASVKAASTDDKKPKTVAKPKTVAKPKAATASKALAKVAVKSKAVTKPKAKAVSAGAKPKAKIVKSPARKKVAVKAVKKAPVKSVKKPKSVKSPVKKVDAKPVKKKVDAKPAKKAPVKSVKKTKSVKSPVKKLAAKKAKK* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0712 231 PRINTS Histone H5 signature 7 28 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan20g0712 231 PRINTS Histone H5 signature 34 51 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan20g0712 231 PRINTS Histone H5 signature 106 120 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan20g0712 231 PRINTS Histone H5 signature 144 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan20g0712 231 PRINTS Histone H5 signature 166 185 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan20g0712 231 MobiDBLite consensus disorder prediction 207 231 - -
Lan20g0712 231 Gene3D - 15 108 IPR036388 -
Lan20g0712 231 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 192 - -
Lan20g0712 231 CDD H15 20 98 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan20g0712 231 MobiDBLite consensus disorder prediction 154 182 - -
Lan20g0712 231 Pfam linker histone H1 and H5 family 21 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan20g0712 231 MobiDBLite consensus disorder prediction 94 115 - -
Lan20g0712 231 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 20 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan20g0712 231 MobiDBLite consensus disorder prediction 183 206 - -
Lan20g0712 231 SMART h15plus2 18 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan20g0712 231 PANTHER HISTONE H1 3 192 - -
Lan20g0712 231 MobiDBLite consensus disorder prediction 1 22 - -
Lan20g0712 231 MobiDBLite consensus disorder prediction 138 231 - -
Lan20g0712 231 SUPERFAMILY "Winged helix" DNA-binding domain 17 97 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0712 Lan-Chr20 5797478 5801094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0712 27 87 Single Myb Histone (SMH) Gene Family AT1G49950 40.984 4.22e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0712 K11275 - gmx:100785055 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0271 8 4783266 4784255 Lan20g0712 20 5797478 5801094 LSH