Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0707 ATGACAAGTAGTGTTGTTATGGAGGGAGAGTTAGGAGACAAATACAAGATGATAAATTTTGAGGAAACCGAGTTGAGACTCGGTCTGCCTGGTGAGTCAGCAGTGCTGAAAAACACTTGTAATACTACTGGGAAGAGAGGTTTCTCAGAGACCAATACTGCTATGGATTTGAAGCTTAATCTTTCTTCTTCTTCTTCTACTACCAAAAATGATGACTCATCTTTGGCTGTAGAGAAAGCCAAAGAGAATATTACTACTTATGCTGCTACAACTGCTTCTCGTGCTAATGACCCAGCAAAACCACCTGCCAAGGCACAAGTTGTAGGTTGGCCACCCGTTCGATCATTCAGAAAGAACATAGTGAATAATGTTCTAAGGAACAACAATGATGAAGCAGAAAAGGAAGTTACCACCACCACCAATAACCAAGGTTTCAATAATAGTAGTGTAGGTGCTTTTGTGAAAGTGAGCATGGATGGTGCACCTTATCTACGCAAGGTGGATTTGAAGTTGTACAAGAGTTACCAAGAGCTGTCAGATGCACTAGCTAAAATGTTCAGTTCCTTCACTATTGGTAAATGTGGGGCCCAAGGCATGAAGGACTTCATGAATGAGAGCAAATTGATAGATCTATTGAATGGTTCTGACTATGTACCCACATATGAGGACAAAGATGGTGATTGGATGCTAGTGGGTGATGTGCCATGGGAAATGTTCGTTCAATCATGCAAACGCCTTCGCATAATGAAAGGTTCTGAGGCAATTGGGCTAGCACCAAGGGCAGTGGAAAAGTGCAAGAATAGAAGCTGA 810 0.4198 MTSSVVMEGELGDKYKMINFEETELRLGLPGESAVLKNTCNTTGKRGFSETNTAMDLKLNLSSSSSTTKNDDSSLAVEKAKENITTYAATTASRANDPAKPPAKAQVVGWPPVRSFRKNIVNNVLRNNNDEAEKEVTTTTNNQGFNNSSVGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIGKCGAQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0707 269 Pfam AUX/IAA family 22 260 IPR033389 -
Lan20g0707 269 ProSiteProfiles PB1 domain profile. 151 251 IPR000270 GO:0005515
Lan20g0707 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 15 262 IPR003311 GO:0005634|GO:0006355
Lan20g0707 269 Coils Coil 122 142 - -
Lan20g0707 269 Gene3D - 146 263 - -
Lan20g0707 269 SUPERFAMILY CAD & PB1 domains 147 250 - -
Lan20g0707 269 PANTHER AUXIN-INDUCED PROTEIN AUX28 15 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0707 Lan-Chr20 5755024 5758505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0707 131 254 B3 DNA Binding Superfamily AT3G61830 29.839 5.38e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan20g0707 AUX_IAA 3e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0707 K14484 - gmx:100796888 339.347