Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0706 ATGGCTGGTAATGGGTCTGAAGGGTTGGGTGATGATTTCTTTGAACAAATCTTAGCAGTTCCTGAAGCCTCATATGGAAGGAGTTTAAGTCATGATGTGGGGTCCATGCCAATGGGGTTGCAATTGGGTTCCACTAGTGGTGGGTTGAGAGGAGGAGGGTCCTTAGGAATTGGGGTGGGTATGCCCTTAGGGTTAAATTTGGAGCAAGGTGCGTTTCTGAGACACCAAGGTGGTCATGATGTTGAGGGTAGCATTAACAATAATCATAATCAGCATCAACAACTCCTTCGTCTTAATAATAACAATAACAATAGTGGGAATAATATTAGTAACAACAACAATAGCACGTCTTCATCTTCATCTTCTACCGCAGGAATCAATTTTGTGTGTGGGTGGCAGGATAGAGATATGCAAATGAGGGGTATGTTTTCAGGGTTTGGACAATTGCATAATCCTCCTCCTACACATGCTCATGCTCACTCTATTCGCCCCATGCTGTTATCTCCTCAGCCCCAACTTCACCGTCATCACCAGCAGCACTTTCAAAGCCAGGCACAACATCCAGTGTCTGTTGCTGCTATGCCACAACAACCACCTGGCATCCGCCCTCGAGTGCGAGCTAGAAGAGGACAAGCCACAGACCCCCACAGTATTGCTGAACGGTTGCGCCGCGAAAGAATCGCGGAGAGAATGAAGGCATTGCAGGAATTAGTTCCCAGCATCAATAAGACAGACAGAGCAGCTATGCTTGATGAAATTATGGAATATGTGAAGTTCCTAAGGCTCCAAGTTAAGGTCCTAAGTATGAGTAGATTGGGTGGAGCTGGTGCAGTTGCTCAGCTTGTCTCTGATGTTCCCTTTTCTGCACTGGAGGGAGAGAATATTGAAGGTGAAGCTAATGAGCAATCATGGGACAAGTGGTCAAATGATGGCACAGAACAACAAGTTGCTAAACTCATGGAAGAAGATGTTGGAGCTGCTATGCAATTTCTTCAATCTAAGGCACTTTGTATCATGCCTATATCTCTAGCTTCAACCATTTTTCGTATGCCTCAATCAGAAGCATCCTCACTCATTAAACCTGAATCAAACAACCACTCATAG 1104 0.4511 MAGNGSEGLGDDFFEQILAVPEASYGRSLSHDVGSMPMGLQLGSTSGGLRGGGSLGIGVGMPLGLNLEQGAFLRHQGGHDVEGSINNNHNQHQQLLRLNNNNNNSGNNISNNNNSTSSSSSSTAGINFVCGWQDRDMQMRGMFSGFGQLHNPPPTHAHAHSIRPMLLSPQPQLHRHHQQHFQSQAQHPVSVAAMPQQPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIMEYVKFLRLQVKVLSMSRLGGAGAVAQLVSDVPFSALEGENIEGEANEQSWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASTIFRMPQSEASSLIKPESNNHS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0706 367 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 354 - -
Lan20g0706 367 SMART finulus 217 266 IPR011598 GO:0046983
Lan20g0706 367 Pfam Helix-loop-helix DNA-binding domain 216 260 IPR011598 GO:0046983
Lan20g0706 367 Gene3D - 206 268 IPR036638 GO:0046983
Lan20g0706 367 MobiDBLite consensus disorder prediction 193 215 - -
Lan20g0706 367 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 209 270 IPR036638 GO:0046983
Lan20g0706 367 PANTHER DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED 7 354 - -
Lan20g0706 367 MobiDBLite consensus disorder prediction 98 123 - -
Lan20g0706 367 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 211 260 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0706 Lan-Chr20 5738510 5743391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0706 180 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 71.123 5.72e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan20g0706 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0706 - - lang:109355094 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0275 8 4820649 4825996 Lan20g0706 20 5738510 5743391 LSH