Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0697 ATGGAGCAGTATGAAGTACTTGAGCAAATTGGAAAAGGTGCTTTCGGTTCTGCTCTTCTTGTGAGACATAAGCATGAGAAGATAAAGTATGTTCTGAAGAAGATTCGGCTTGCCCGCCAAACCGAGCGCACTCGTAGATCAGCACACCAGGAGATGGAGCTCATCTCTAAATTGCAAAACCCATTTATTGTGGAGTATAAAGATTCGTGGGTAGAAAAGGGTTGCTATGTCTGCATTATTATAGGTTATTGTGAGGGTGGAGATATGGCAGAAGCTATAAAGAAAGCTAATGGTGTCCTGTTTCCTGAGGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCACGTGAAACATATTCTTCATCGTGATGTCAAGTGTTCAAATATCTTCTTGACTAAAGATCATGAGATACGCCTCGGTGATTTTGGACTGGCCAAAATTTTGACTTGTGATGACCTTGCTTCCTCTGTTGTTGGAACTCCCACCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCATTGGGATGTTGTATATATGAAATGACCTCACATAAGGCAGCATTCAAAGCATTTGATATACGATCATTGATTAACAAAATTAATAAGTCCATAGTGGCTCCTCTGCCAGCAAAATATTCTGGTTCATTTCGAAGTCTTGTTAAAAGCATGTTGCGGAAAAATCCAGAGCTCAGACCCAGTGCTGCAGAGCTGCTTGGGCACCCATATCTTCAACCCTATGTTCGTAAGGTCCATCTCAAAATCAATAGCCCCAGGCGAAGTACATTACCAGTTCATTGGCCAGAATCCAACTACCGGAAGAAAACTAGATTTGTCGATCCAGAAGATGATCGAATTCCCACTTATAAGGATAAGCAGTATTCTTTCTGCAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCATATCATGATTCTGTATGCTCTACCCTTGAAATAGATTGTATTCCAGATCATATAAATCAACAGTTAGCAGAATTAGGTGTTGGAGATAGTCATGAAGTGAAGTCAATCCATAAGTCTGTTTCCAGAACTTTTAGTTTTGCTAATACTCGAAGGCTGACTCCATTTAAAGTTTCTGTCATCAACAAGAAAGTAATGGAACCCTCTAAGAATCATAAAGCAGCAACGCAAACTCTTCCTGTTTCACGCAATACCACAAAATATGCTCATGCCAATAGCAGAGCATCATTTCCACTGCCAAGGGGTGGTACTCAGCAGCAGCCTTCCTGCCGGCCCAATATGGGTTTGCTAAGCCATGTGTCTTCGCCAGACATCTCATTCAACTCTCCCATTTTTGATAAGATAGCTGAATTTCCATTAGCATCAAATGAAGATTCATTGTTTTCCCTCAATACAACACCAACATCTGCACAGGATTCTGCTGGCTACCCACCCGGTGGCAATCATTCAACTGTAATAGACAAATGCACAGTACAGGTATATAATAGACCTAGTTCTACGGATGCTTGGCAGGGAATCAAGCGCAGCATGTTAAAGGAAATCAATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACAGCAGGTCCATTAAGCCACACCTCTTCGGACTTGCGCCGCCGACAGTTTGACACTTCATCATACCAACAAAGGGCTGAAGCCTTGGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTGCAGCAGGCAAGGTATGACGAACTTGGGGTTTTGTTGAAACCATTTGGGCCTGAAAAGGTTTCCCCGAGGGAAACTGCTATCTGGTTGAGTAAGAGCATCAAAGAGAACACTCTCAGCCCTGAAGAATCCCCGTGA 1860 0.4231 MEQYEVLEQIGKGAFGSALLVRHKHEKIKYVLKKIRLARQTERTRRSAHQEMELISKLQNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHVKHILHRDVKCSNIFLTKDHEIRLGDFGLAKILTCDDLASSVVGTPTYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKAAFKAFDIRSLINKINKSIVAPLPAKYSGSFRSLVKSMLRKNPELRPSAAELLGHPYLQPYVRKVHLKINSPRRSTLPVHWPESNYRKKTRFVDPEDDRIPTYKDKQYSFCNDRTLNPSVSGAYHDSVCSTLEIDCIPDHINQQLAELGVGDSHEVKSIHKSVSRTFSFANTRRLTPFKVSVINKKVMEPSKNHKAATQTLPVSRNTTKYAHANSRASFPLPRGGTQQQPSCRPNMGLLSHVSSPDISFNSPIFDKIAEFPLASNEDSLFSLNTTPTSAQDSAGYPPGGNHSTVIDKCTVQVYNRPSSTDAWQGIKRSMLKEINEDKSGSSDQNATAGPLSHTSSDLRRRQFDTSSYQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPEKVSPRETAIWLSKSIKENTLSPEESP* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0697 619 PANTHER SERINE/THREONINE-KINASE NEK4 1 604 - -
Lan20g0697 619 MobiDBLite consensus disorder prediction 524 554 - -
Lan20g0697 619 MobiDBLite consensus disorder prediction 529 545 - -
Lan20g0697 619 CDD STKc_Nek 3 258 - -
Lan20g0697 619 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lan20g0697 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lan20g0697 619 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0697 619 Gene3D Transferase(Phosphotransferase) domain 1 86 310 - -
Lan20g0697 619 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 604 - -
Lan20g0697 619 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lan20g0697 619 SUPERFAMILY Protein kinase-like (PK-like) 1 304 IPR011009 -
Lan20g0697 619 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0697 619 Pfam Protein kinase domain 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0697 Lan-Chr20 5673686 5680664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0697 1 261 MAP Kinase Kinase Gene Family AT4G26070 33.948 4.90e-36 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lan20g0697 Pkinase 2.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0697 K08857 - gmx:100804898 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0279 8 4850875 4857567 Lan20g0697 20 5673686 5680664 LSH
Lan4g0840 4 10357390 10363103 Lan20g0697 20 5673686 5680664 PCT
Lan19g0605 19 11334044 11336915 Lan20g0697 20 5673686 5680664 PCT
Lan16g1114 16 18243454 18248964 Lan20g0697 20 5673686 5680664 PCT
Lan20g0697 20 5673686 5680664 Lan4g0840 4 10357390 10363103 PCT
Lan20g0697 20 5673686 5680664 Lan19g0605 19 11334044 11336915 PCT
Lan20g0697 20 5673686 5680664 Lan16g1114 16 18243454 18248964 PCT