Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0690 ATGAATGGGGTCTCACAGTTAGAACTAGATGACTCTGATTTTGTTGAAGTTGATCCAACTCGCAGATATGGCAGATACAATGAAATACTTGGCAAAGGAGCTTCAAAGACGGTATATAGAGCATTTGATGAGTATGAAGGGATTGAAGTTGCTTGGAATCAGGTCAAGCTGTATGATTTCCTACAGAGTCCTGAAGATCTTGAGAGGCTTTACTGTGAAATTCATCTCCTGAAAACACTGAAGCATAGGAACATTATGAAATTTTATACATCTTGGGTTGATACTGCTAATAGGAATATTAATTTCGTTACTGAAATGTTTACTTCTGGTACTCTTAGACAGTATAGGCTAAAACACAAGAGAGTTCACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCTTGAAAGGACTGCTCTATCTTCATAGCCATGACCCTCCTGTGATCCATAGAGATCTCAAATGTGATAACATTTTTATCAATGGAAACCATGGAGAAGTGAAGATTGGGGATCTCGGCCTGGCTGCAATCCTTCGGAAATCCCATGCCGCTCATTGTGTAGGAACCCCGGAATTCATGGCCCCAGAAGTATATGAAGAGGCATATAATGAATTAGTTGACATATATTCTTTTGGTATGTGCATATTAGAGATGGTCACATTTGAATTTCCTTATAGTGAATGCACTCATCCAGCTCAAATCTACAAGAAAGTTATTTCTGGGAAAAAACCAGATGCTTTGTATAAAGTGAAGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCAACAGTTTCTCTAAGGCTCTCTGCAAAGGAGCTTCTAGATGATCCATTTCTCCGAGATGATGATTACGAGTATGATTTGAGAACCATAAACAGTGGGGGATTGGATGACCTTGTTCCTCTTATCAAGCAGCCGTTCTTCGATCTTCATCGAAGCTATAGTAACTTTAGTAATGAATACTCAAATGGTTTTGGGTATGAAGGAGACTGGAGTTCTCATCCAGCTGAGGTTGAACCTAGTGGAATTGAACTTTTCGAGTACCATGATGATGAACCCTCTGAAGATGTTGGCATAAGCATCAAGGGCAAGAGGAAAGACGATGATGGCATCTTTTTGAGACTAAGAATTACTGATAAAGAAGGTCGTATTCGCAATATTTATTTCCCATTTGACATAGAGATGGATACAGCAATAAGTGTGGCAACGGAAATGGTAGCAGAACTTGACATTACTGATCAGGATGTTACCAGAATAGCAGATATGATAGATGGGGAAATTGCTTCCTTGGTACCTGGATGGAGGCCAGGACCAGGATTTGAGGAAAGTCCCCATTTAGCCAATCAAGGATTATGTCAAAATTGTGTGTCTAATCATACTTCTAGTGGCTCTCTACTTGATTTTATTTCACATAATCCAGGTAGCAAGAACTTGCAAGTTCTTGAGTGCTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTCGAAGAGATCTCATTCCAATCTGAGGAGTATGACAATCATGGGTTATGGAATCAGCATGAAAGTCGTGAACTGAGTCCGGTGGAGTCTGATCAAAGCCATTCTGATGAACCATATGAACAGTTAGACAAATCAGTATTAGCTGAAGACAAAGAACAGGATGCTTTGGAAAACAACCTTGCACCCAATGCAGGAAATCCTCTAAGGAACTTATCAGGAACCCATGATTTATCGACTATCCGCTCACTCTACTGTGACCTTGACAATGACTATGAAAAGGAGATTCAAAAGGAACTGAGGTGGCTCCGAGCAAAATACCAGATGGAGTTAAGGGAAATTAAGGATCAACAGTTTGAACTAACAGCTAATCACAAAACAGAATGCAGCTTTATGTCAACTTCACCAACAGAAATGTTAAACAGAGGCAACAATGGGATTGACTTGAAGAAACCCTTAATCAGTTACTTAAACTCTGATTTCAGGAGCCATCCTCATGCCCATAAGAGCAGCCCCAATTCGGATACTCGAAGGGACCAAAATTGTGAGGCGGCGGGATCGCTTGGAGAAGAAGGTATGGTTACTGCAATGAGTTTTTACACAGGCTCATTGCTTCCTCACTCACTGCACAGGACAGTTTCCCTCCCAGTTGATGCTGTTGATATATAA 2154 0.4085 MNGVSQLELDDSDFVEVDPTRRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVHIRAVKHWCRQILKGLLYLHSHDPPVIHRDLKCDNIFINGNHGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEFPYSECTHPAQIYKKVISGKKPDALYKVKDPEVRQFVEKCLATVSLRLSAKELLDDPFLRDDDYEYDLRTINSGGLDDLVPLIKQPFFDLHRSYSNFSNEYSNGFGYEGDWSSHPAEVEPSGIELFEYHDDEPSEDVGISIKGKRKDDDGIFLRLRITDKEGRIRNIYFPFDIEMDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPGWRPGPGFEESPHLANQGLCQNCVSNHTSSGSLLDFISHNPGSKNLQVLECCRHGCASMHGRFEEISFQSEEYDNHGLWNQHESRELSPVESDQSHSDEPYEQLDKSVLAEDKEQDALENNLAPNAGNPLRNLSGTHDLSTIRSLYCDLDNDYEKEIQKELRWLRAKYQMELREIKDQQFELTANHKTECSFMSTSPTEMLNRGNNGIDLKKPLISYLNSDFRSHPHAHKSSPNSDTRRDQNCEAAGSLGEEGMVTAMSFYTGSLLPHSLHRTVSLPVDAVDI* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0690 717 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0690 717 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0690 717 MobiDBLite consensus disorder prediction 657 671 - -
Lan20g0690 717 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Lan20g0690 717 MobiDBLite consensus disorder prediction 656 676 - -
Lan20g0690 717 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 706 - -
Lan20g0690 717 CDD STKc_WNK 22 281 - -
Lan20g0690 717 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0690 717 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 706 - -
Lan20g0690 717 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Lan20g0690 717 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Lan20g0690 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Lan20g0690 717 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 374 428 IPR024678 GO:0004674|GO:0005524
Lan20g0690 717 Gene3D - 352 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0690 Lan-Chr20 5561265 5564486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0690 127 716 MAP Kinase Kinase Kinase AT3G04910 53.968 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lan20g0690 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0690 K08867 - gmx:100775959 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0843 4 10378082 10383278 Lan20g0690 20 5561265 5564486 PCT
Lan16g1107 16 18185952 18189777 Lan20g0690 20 5561265 5564486 PCT
Lan20g0690 20 5561265 5564486 Lan4g0843 4 10378082 10383278 PCT
Lan20g0690 20 5561265 5564486 Lan16g1107 16 18185952 18189777 PCT