Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0689 ATGGCGGACAAGGCTGTTACCATCAGAACACGTAAGTTCATGACCAACAGGCTCCTCTCAAGGAAGCAATTCATCATTGATGTTCTTCATCCAGGGAGGGCTAATGTTTCAAAGGCCGAGCTGAAACAGAAGCTGGCAACCATCTATGATGTTAAGGACCCCAACTCTGTGTTTGTGTTCAAGTTCAGAACTCATTTTGGAGGTGGCAAATCCACTGGATTTGGTTTGATTTATGATTCAGTTGAGAATGCTAAGAAGTACGAGCCCAAGTACCGCCTCATCAGGAATGGACTTGATACTAAGATAGAGAAATCCAGGAAGCAACTGAAGGAAAGGAAGAACAGGGCTAAGAAGATTCGTGGAGTAAAGAAGACTAAGGCTTCTGATGCTGCCAAGGCTGGTAAAAAGAAATGA 414 0.4396 MADKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKQKLATIYDVKDPNSVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKIEKSRKQLKERKNRAKKIRGVKKTKASDAAKAGKKK* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0689 137 MobiDBLite consensus disorder prediction 104 137 - -
Lan20g0689 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Lan20g0689 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lan20g0689 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lan20g0689 137 Gene3D - 1 132 - -
Lan20g0689 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lan20g0689 137 Pfam Ribosomal protein S24e 26 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lan20g0689 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0689 Lan-Chr20 5488786 5490496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0689 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 85.606 2.50e-83 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0689 K02974 - pvy:116133712 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0285 8 4938139 4940285 Lan20g0689 20 5488786 5490496 LSH
Lan4g0500 4 7589197 7591040 Lan20g0689 20 5488786 5490496 PCT
Lan20g0689 20 5488786 5490496 Lan4g0500 4 7589197 7591040 PCT