Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0682 ATGACTGAGAAAGTAGGGAAAAGAGAGAGGATGAAGAACATTTTCAAGAAGCTTCACATTGGAAGCAACAATAATACCAACGATCCTCATCGATCCAATGAAACCACGCCACCTGTCCCATCGCCTTTGTCCTCCGCCGATAACCGAACCGTTCGGAACGCCACATCGTCTCCTGCTACGGCTAGTCCTTCTTCATCGCCGTCCACGGCGGCGGCTGTTCCATCTGCTGCCGCAACAACCCCGGCGATGAATCGGCAGGATTTTATCTCGTCGGAAGAGGAGTTTCAGATGCAGCTAGCACTAGCTATCAGCGCTTCCAATTCGGAGTTCCGTGATGATCCTGAAAAGGATCAGATCCACGCTGCGACGTTGCTGAGCTTGGGAGGACGTCGAATTGATTCCGCGAGGAGCAAGGAGGACGTGGCGGAGGCGCTGTCTAGGCACTACTGGGAATACAACGTGCTTGACTATGAAGAGAAAGTAATAGATGGTTTTTATGATTTATATGGGCTCAATATGGATTCTTCAATGCAAGGAAAGATGCCTTCTCGTGCAGATCTTGAAGCAGACTCCGGAAGTTCTAGCTTTGAAGTGGTCATAGTTAATCAAACAATTGATCCTGCTCTGGAAGAGCTAGTGCAAATTGCTCATTGTATTGCATTAGACTGCCCTGTCACTGAGGTTGGTATTTTGGTGCAAAGGCTTGCTGAACTTGTTACAAGCCATATGGGTGGTCCTGTAAAGGACGCTAATAATATATCGGCACGATGGACAGAGAGAAGTACAGAGTTAAGAACTTCTCTTCACACAAGTGTATTGCCTCTAGGGTCCTTAAATATTGGGCTCTCTAGACACCGTGCTTTGCTTTTCAAGGTATTAGCTGACAACATTAAGATGCCTTGTAGATTGGTAAAAGGTAGCCATTACACTGGTGTTGAGGATGATGCTGTCAACATTATAAAGGTGGAGGATGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCTGGAACGCTTATCCCAGTTGATATTTCAAGTACGAAGGATAGTGCCTATAAATCTTACAATCCCAAGATTTTGCCAAGTTTACCTTCCACTAAGGAAACTGAATTTTCTTACTCAAGACCTATCCCATCTCTCGGTGAAGGTAGTAGTCAGAATCCTGTAGTAAAAGGCCATCCACAACCCTGGAATGGAAAATCATATTTTGATAAGCCAGATTACATGCCTTTTAACATAGATTTGAGCAGAGACACTGGCATTGGTCCCTCTAAGATGCCTAATGGAGGGACTCCTAACAAACTCGAAGATTTGTCACCCTCGTCTGGTATTCCTTTGTACAAAGGGAGTCTTGGAATGAATGCAGTTGGAGATGGGACAAGATTGAATGTCAATGTTGTACCATATGCTCAGGACAGCCTCAATGACTCTCAGAGCCTTTTTGCAGATCTCAATCCATTCCAGATAAAGGGGACTGGGAAGATCTCTGTGCATAACAAACATGTGAGAAATAAAGCTCCTGAACTTCAGAATACAAGAAACAATACTGTTTCTGTTCGACCTCTGTGGAAGAATCAATATGCTTACAATGAAGTCCCTAGGAAAACTAATCCCAATCCTAATGAATATAATCCTTCTTTATTGGTTTCCAATAGTTCTTCCGTTTCTGAAAACGTTGATCTCGGTAGTTCCAAATCATCATATAATTCACATGTAAATAATGGCATAAATGCTCAAACTTTGGCAGAAGTTACTAGTTCAGATTCACCATCTTCTGAAGCTGAACTAAGGCGAATCAATGATCTCAATGCTAATTATAATATGGAGGATTTGGGGAATTCTCAAAATGGCATGGTAGAAGTGGTTAAAGAACATGAAAACATTGAAATCAGACATCAAGACCAAAGGAAGCGCACACATGACAGATTCATGAGTAGCAATTTGAAATTAAAGGATCCGGAGACAGAGAGTCCTAGCTCGTTGATGGATTCCATTTCGAACAGGATTGATTTGGATGACGTAGATGTTGGTGAATGTGAGATTCCATTGGAGGATCTTGTTATTGGTGAAAGAATTGGTCTAGGTTCATATGGAGAGGTGTACCATGCTGACTGGAACGGCACAGAGGTTGCTGTGAAGAAATTTTTGGATCAGGATTTTTCAGGTGCTGCCTTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGACTGCGTCATCCAAATGTTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCCAATCTCTCAATTATTTCGGAGTTTATTCCAAGAGGAAGCTTGTACCGAATTCTTCATCGCCCAAATTGTCAGATCGATGAGAAACGAAGGATAAAAATGGCTCTGGATGTGGCTAGGGGCATGAATTGCTTGCACGCCAGCAATCCTACAATTGTTCACCGAGATCTGAAATCCCCAAATCTTTTGGTTGATAAGAACTGGAACGTTAAGGTATGTGATTTTGGGTTGTCACGCCTGAAGCACAACACGTTTTTGTCATCCAAGTCTACTGCTGGAACGCCTGAATGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAGAAGTGTGATGTTTATAGTTTTGGAGTCATCCTATGGGAGCTGGCCACTCTAAGGTTGCCATGGACTGGAATGAATCCTATGCAAGTTGTTGGGGCAGTAGGTTTCCAAAACCGTCGACTTGATATTCCCAAGGAAGTTGATCCTTTAGTTGCAAGAATAATCTGGGAATGTTGGCAACAGGATCCAAATCTGCGCCCCTCATTTGCACAGCTTACAGTGGCATTAAAGCCCCTGCAGCGTTTAGTTATTCCATCTAGTCAAGACCAGATAGCTTCACCTCTGCCACAGGAGATATATGTAAATTCCACCCCCTGA 2904 0.4342 MTEKVGKRERMKNIFKKLHIGSNNNTNDPHRSNETTPPVPSPLSSADNRTVRNATSSPATASPSSSPSTAAAVPSAAATTPAMNRQDFISSEEEFQMQLALAISASNSEFRDDPEKDQIHAATLLSLGGRRIDSARSKEDVAEALSRHYWEYNVLDYEEKVIDGFYDLYGLNMDSSMQGKMPSRADLEADSGSSSFEVVIVNQTIDPALEELVQIAHCIALDCPVTEVGILVQRLAELVTSHMGGPVKDANNISARWTERSTELRTSLHTSVLPLGSLNIGLSRHRALLFKVLADNIKMPCRLVKGSHYTGVEDDAVNIIKVEDEREFLVDLMAAPGTLIPVDISSTKDSAYKSYNPKILPSLPSTKETEFSYSRPIPSLGEGSSQNPVVKGHPQPWNGKSYFDKPDYMPFNIDLSRDTGIGPSKMPNGGTPNKLEDLSPSSGIPLYKGSLGMNAVGDGTRLNVNVVPYAQDSLNDSQSLFADLNPFQIKGTGKISVHNKHVRNKAPELQNTRNNTVSVRPLWKNQYAYNEVPRKTNPNPNEYNPSLLVSNSSSVSENVDLGSSKSSYNSHVNNGINAQTLAEVTSSDSPSSEAELRRINDLNANYNMEDLGNSQNGMVEVVKEHENIEIRHQDQRKRTHDRFMSSNLKLKDPETESPSSLMDSISNRIDLDDVDVGECEIPLEDLVIGERIGLGSYGEVYHADWNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIISEFIPRGSLYRILHRPNCQIDEKRRIKMALDVARGMNCLHASNPTIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWTGMNPMQVVGAVGFQNRRLDIPKEVDPLVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSSQDQIASPLPQEIYVNSTP* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0682 967 Pfam Protein tyrosine and serine/threonine kinase 687 936 IPR001245 GO:0004672|GO:0006468
Lan20g0682 967 Pfam Ethylene-responsive protein kinase Le-CTR1 142 340 - -
Lan20g0682 967 ProSiteProfiles Protein kinase domain profile. 686 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0682 967 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 79 959 - -
Lan20g0682 967 MobiDBLite consensus disorder prediction 18 79 - -
Lan20g0682 967 CDD STKc_MAP3K-like 692 935 - -
Lan20g0682 967 PRINTS Tyrosine kinase catalytic domain signature 760 773 IPR001245 GO:0004672|GO:0006468
Lan20g0682 967 PRINTS Tyrosine kinase catalytic domain signature 799 817 IPR001245 GO:0004672|GO:0006468
Lan20g0682 967 PRINTS Tyrosine kinase catalytic domain signature 846 856 IPR001245 GO:0004672|GO:0006468
Lan20g0682 967 PRINTS Tyrosine kinase catalytic domain signature 865 887 IPR001245 GO:0004672|GO:0006468
Lan20g0682 967 PRINTS Tyrosine kinase catalytic domain signature 909 931 IPR001245 GO:0004672|GO:0006468
Lan20g0682 967 Gene3D Transferase(Phosphotransferase) domain 1 765 948 - -
Lan20g0682 967 MobiDBLite consensus disorder prediction 631 649 - -
Lan20g0682 967 PANTHER SERINE-THREONINE PROTEIN KINASE 79 959 - -
Lan20g0682 967 SMART serkin_6 686 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0682 967 Gene3D Phosphorylase Kinase; domain 1 679 763 - -
Lan20g0682 967 ProSitePatterns Protein kinases ATP-binding region signature. 692 714 IPR017441 GO:0005524
Lan20g0682 967 SUPERFAMILY Protein kinase-like (PK-like) 674 957 IPR011009 -
Lan20g0682 967 MobiDBLite consensus disorder prediction 1 79 - -
Lan20g0682 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Lan20g0682 967 MobiDBLite consensus disorder prediction 631 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0682 Lan-Chr20 5421506 5431514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0682 11 922 MAP Kinase Kinase Kinase AT1G08720 54.989 0.0 917
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lan20g0682 PK_Tyr_Ser-Thr 4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0682 - - aprc:113870732 1504.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0682 20 5421506 5431514 Lan9g0472 9 7029907 7032556 PCT
Lan20g0682 20 5421506 5431514 Lan5g1225 5 26111281 26113546 PCT
Lan20g0682 20 5421506 5431514 Lan19g0482 19 7060254 7062723 PCT