Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0680 ATGGGGTGTGTGTTTAGCCGAGAAGTGTCATCGGGAATAATCTCTGAGGTGAAGGAAAATAAGAATTTGAGTGTTGAGTCAGACAGGAAGGTTGGTGAAGTCTCCACTAACAATGCTGAGGGGAATGTAGTGGAGAATCAGAATGGTCATAAGGAGAAGGAAGAGAAGGGCGGTGATGATGCGACTCAAACTCAGTGGCCGCAAGGTGAAAGAAGAAGAGCATCAAGGCCAAACCCAAGGCTAAGTAATCCCCCAAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTTACGGCAGTATGTGGGGAAGCACTTAGTGGGTGGACTCCACGGAAGGCTGACACATTTGAGAAAATTGATAAGATCGGTCAAGGGACATATAGTAATGTGTACAAAGCTAAAGATATGTTGACTGGTAAGATTGTTGCACTTAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCTAGAGAGATTCTTATTCTCCGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCAAGAATGTCCATGAGTTTGTATCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTTCTGCAAGTCCTGAAATCAAGTTCTCGGAGCCTCAGGTCAAATATTACATGCATCAACTGCTATCAGGACTTGAGCACTGTCATAAGAGACACGTGCTTCACCGTGATATTAAAGGATCAAATCTTCTGATTAACGAGGAAGGGATACTTAAGGTTGCTGACTTTGGACTTGCATCTTTCTTTGATCCAAACCGCAGGCATCCTATGACTAATCGTGTAGTTACCCTTTGGTATCGGCCTCCTGAGTTGCTGCTCGGTGCCACAGAATATGGTGTGGGTGTGGACCTTTGGAGTGCTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAGCCAATTATGCCTGGTCGTACAGAGGTGGAACAATTACATAAGATATACAAGCTTTGTGGTTCACCTTCTGATGAGTATTGGAAAAAGTCAAAGTTGCCCAACGCTACTTTGTTTAAACCCCGAGAACCATACAAAAGATATATAAGAGAGACATTTAAAAAAATTCCTCCTTCTGCACTATCCCTTATTGATACTCTTCTTGCTATTGATCCAGCCGAACGGTTGAGTGCCTCAGATGCCTTAGGAAGTGAGTTCTTTACAACAGAACCTTATGCTTGTGATCCTTCTGATCTTCCAAAATATCCCCCAACTAAGGAAATGGATGCTAAACGACGGGATGATGAAGCGAGGAGATTAAGAGCTGCCGGCAAAGCTCAAGGTGGTGGTCCAAAGAAGCATCGTACACGTGATCGTGCTGTAAAACCCAATCCTGCTCCTGAAGCCAATGCTGAGCTTCAATACAATATTGATAGAAGGCGTCTAGTGACGCGTGCAAATGCTAAGAGCAAGAGTGAAAAATTCCCTCCACCACATGAAGATGGACAACTTGGTTTTCCTTTGGGATCTTCACAACATATTGATCCAGATATTGTTTCTAGTGTTGTTTCTTTGGGTTCAACCTCATATATATATTCAAGGGAACCATTCCAAGATTGGTCAGGTCCCATTGGTAATTCTGCTAGCAATAATGTTATGCCAAAGAGGAAGAAGAAACAAAGTGCAGGTGATGCATTGGATTTTTCAAAACCACATAAAGGTACCCTGAAGGATAAAGTTAATGGAAATAAAATCATAGCTTAG 1755 0.4279 MGCVFSREVSSGIISEVKENKNLSVESDRKVGEVSTNNAEGNVVENQNGHKEKEEKGGDDATQTQWPQGERRRASRPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWTPRKADTFEKIDKIGQGTYSNVYKAKDMLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSMSLYLVFDYMVHDLAGLSASPEIKFSEPQVKYYMHQLLSGLEHCHKRHVLHRDIKGSNLLINEEGILKVADFGLASFFDPNRRHPMTNRVVTLWYRPPELLLGATEYGVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRYIRETFKKIPPSALSLIDTLLAIDPAERLSASDALGSEFFTTEPYACDPSDLPKYPPTKEMDAKRRDDEARRLRAAGKAQGGGPKKHRTRDRAVKPNPAPEANAELQYNIDRRRLVTRANAKSKSEKFPPPHEDGQLGFPLGSSQHIDPDIVSSVVSLGSTSYIYSREPFQDWSGPIGNSASNNVMPKRKKKQSAGDALDFSKPHKGTLKDKVNGNKIIA* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0680 584 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Lan20g0680 584 CDD STKc_CDK9_like 120 404 - -
Lan20g0680 584 ProSiteProfiles Protein kinase domain profile. 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0680 584 Gene3D Transferase(Phosphotransferase) domain 1 203 443 - -
Lan20g0680 584 MobiDBLite consensus disorder prediction 554 576 - -
Lan20g0680 584 SMART serkin_6 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0680 584 MobiDBLite consensus disorder prediction 537 584 - -
Lan20g0680 584 MobiDBLite consensus disorder prediction 419 439 - -
Lan20g0680 584 MobiDBLite consensus disorder prediction 20 92 - -
Lan20g0680 584 MobiDBLite consensus disorder prediction 46 60 - -
Lan20g0680 584 MobiDBLite consensus disorder prediction 537 553 - -
Lan20g0680 584 SUPERFAMILY Protein kinase-like (PK-like) 114 411 IPR011009 -
Lan20g0680 584 PANTHER OS01G0367700 PROTEIN 50 557 - -
Lan20g0680 584 PANTHER CELL DIVISION PROTEIN KINASE 50 557 - -
Lan20g0680 584 Gene3D Phosphorylase Kinase; domain 1 107 202 - -
Lan20g0680 584 Pfam Protein kinase domain 120 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0680 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Lan20g0680 584 MobiDBLite consensus disorder prediction 29 45 - -
Lan20g0680 584 MobiDBLite consensus disorder prediction 411 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0680 Lan-Chr20 5394724 5400778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0680 112 444 Core Cell Cycle Gene Families AT5G10270 50.716 1.59e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lan20g0680 Pkinase 2e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0680 K08819 - gmx:100817289 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0504 4 7656635 7680718 Lan20g0680 20 5394724 5400778 PCT
Lan20g0680 20 5394724 5400778 Lan4g0504 4 7656635 7680718 PCT