Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0679 ATGGCTTTTGGTTTAATCTCTGCAGTTTCAAAATTGCAAATGGTATCCACTTCGGATCATGCATCTGTAGTCTCAATGAACCTATTTGTTGCACTTCTGTGTGCTTGTATTGTCATTGGTCATCTTCTCGAGGAGAATCGTTGGATGAATGAGTCTATCACTGCCCTTTTGATTGGTCTTTGCACTGGTGTAGTCATTTTGCTGCTTAGTGGTGGTACAAGCTCACACGTTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTTCCACCTATAATATTTAATGCTGGGTTTCAAGTGAAAAAGAAGCAGTTTTTTGTCAACTTCATGACCATCATGTTGTTTGGTGCTATTGGTACATTAATATCTTGTACCATCATAACCTTGGGTGTTTCACAAATTTTTAAGAGGATGAATATCGGTCCACTGGAAATAGGGGATTATCTAGCAATTGGTGCAATATTTGCTGCGACCGATTCTGTGTGCACATTGCAGGTGCTAAATCAGGATGAAACACCTTTACTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAGAGCTTTGACCTCGAGCAAATTGACACGTCAATTGCCTCACAATTTATTACCAACTTCTTGTATCTGTTCGTCACAAGCACATTGCTTGGGGTTTTGTCAGGTCTGCTCAGTGCCTACATCATTAAAAAGTTGTATATTGGCAGGCACTCTACAGATCGAGAGGTTGCTCTTATGATGCTAATGGCATACCTCTCCTACATGCTGGCTGAGTTATGCTATCTGAGTGGTATTTTAACTGTGTTCTTTTGTGGGATTGTTATGTCTCATTATACTTGGCACAATGTGACAGAGAGCTCAAGAGTCACCACGAAGCATGCTTTTGCAACCTTGTCGTTTGTTGCTGAGATCTTTATCTTCCTTTATGTTGGTATGGATGCTATGGACATCGAAAAATGGAGGTTCGTCAGTGATAGCCCTGGAACATCCGTAGCAGTAAGTTCAGTACTGTTGGGTCTAGTACTTGTTGGAAGAGCAGCTTTTGTTTTCCCGTTATCCTTCCTATCCAACTTATTTAAGAAGTCACAAAGCGAGAAGCTCTCCTTCAGACAGCAGGTTATCATTTGGTGGGCTGGTCTTATGCGAGGTGCTGTTTCCATGGCACTTGCTTATAATCAGTTCACCATGTTGGGTCATACACAACTGCGAACCAATGCAATCATGATCACTAGCACAATCACTGTTGTGCTTGTCAGCACAGTGGTGTTTGGTTTGATGACTAAGCCACTGATAAGGCTTTTGCTTCCTCATGGCCCTCCTAAAGGCACAAGCAGCATGATAAGCACAGATCCATCCACTCCAAAATCCATTAATATCCCACTTCTAGGAAGTGCTCAAGAATCTGAGGCTGATATCGGTGGCCATGAAATTCATCGTCCAAGCAGCATCCGTGCCTTACTAGCCACACCAACACACACCGTTCACCGATTATGGCGCAAGTTTGATAATGCATTCATGCGTCCTGTTTTTGGTGGCAGAGGTTTTGTTCCTGTGGAGCCTGGCTCACCATCTGAACGCAATGGTCGTCAATGGGGTTGA 1632 0.4277 MAFGLISAVSKLQMVSTSDHASVVSMNLFVALLCACIVIGHLLEENRWMNESITALLIGLCTGVVILLLSGGTSSHVLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLISCTIITLGVSQIFKRMNIGPLEIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLEQIDTSIASQFITNFLYLFVTSTLLGVLSGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELCYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDAMDIEKWRFVSDSPGTSVAVSSVLLGLVLVGRAAFVFPLSFLSNLFKKSQSEKLSFRQQVIIWWAGLMRGAVSMALAYNQFTMLGHTQLRTNAIMITSTITVVLVSTVVFGLMTKPLIRLLLPHGPPKGTSSMISTDPSTPKSINIPLLGSAQESEADIGGHEIHRPSSIRALLATPTHTVHRLWRKFDNAFMRPVFGGRGFVPVEPGSPSERNGRQWG* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0679 543 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lan20g0679 543 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lan20g0679 543 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lan20g0679 543 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Lan20g0679 543 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 541 - -
Lan20g0679 543 PANTHER SODIUM/HYDROGEN EXCHANGER 7 541 IPR018422 GO:0006812|GO:0015299|GO:0016021
Lan20g0679 543 Pfam Sodium/hydrogen exchanger family 30 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lan20g0679 543 Gene3D - 146 197 - -
Lan20g0679 543 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 25 445 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0679 Lan-Chr20 5381144 5386838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0679 7 541 Antiporters AT3G05030 76.909 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0679 - - gmx:100816746 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0298 8 5086400 5090346 Lan20g0679 20 5381144 5386838 LSH
Lan2g0308 2 2670282 2676950 Lan20g0679 20 5381144 5386838 PCT
Lan20g0679 20 5381144 5386838 Lan2g0308 2 2670282 2676950 PCT