Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0671 ATGGCGAGTGACGGTGACTCTACTCAAGCATCTTATTGTTTATGGGTCAATAAGAAAAGCTTTGCTAATAAATCAAAGAAGGTCCTAACAGGCGATTCTTTTAATAGGAGAATAGGATCTCTATTTTCTCGCTCTGCTTCTGCCCAAGATTTGAGACAATTTGATTTGGTGAAAGAGAAAGAAGATGAGTCCTCTCCAAGGGGAGTCTTAGAGTCCTGCAATCGAGACTTTGACTCCGAGCACCAACCACCTGAATCGGAGACCAGTTGTTCAAGGGCACAATCACATTGGGGCAAACTTCCCAAGCTGTGGAAAAAAAGATCATTTAAGCGTCTTCCATCGTCCTTGCAAGCCTTGCCCCATATTGGTGTCCCAAGATTGTTAAAGGGGAAAAGCAAAAGCACTAGAGAAAATCATGTTCTAAATAATCTATACAATTTCAGGTCTTCGTTGGTGACTTTTAGCCTCTCTGAACTGAGAAATGCAACCAATAATTTTAGCAATGAAAATATAATTGGAAGAGGTGGTTTTGCTGAGGTTTTCAAGGGTCGTCTCCAAGATGGGCAACTAATAGCTGTGAAGAAATTGACTAAAGGGACTACAGAAGAAGTGATATCAGGCTTTCTATCTGAGCTTGGCGTTATCGCTCATGTTGACCATCCTAATACTGCCAAGCTTATTGGATGTGGTGTAGAAGGCGGAATGCACCTTGTATTTGAATTATCTACATTGGGAAGTCTAGGGACCCTTCTTCACAGTCCAGATAAAAATAAATTGGACTGGAGTAAAAGATATAAAATTGCTCTAGGAATAGCTGATGGTCTCCTCTACCTGCATGAGAACTGTCACCGGCGAATCATTCACAGAGACATTAAGTCGGAGAATATTCTGCTCACTGAGAATTTTGAGCCACAGATTTGTGATTTTGGGCTAGCAAAGTGGTTACCTGAAGATTGGACTCACCATAATGTATCAAAATTTGAAGGCACATTCGGGTATTTTGCTCCTGAATATTGCATGCATGGCATAGTAGATGAGAAAACAGATGTTTATTCTTTTGGGGTCCTACTCTTGGAGATCATAACTGGGCATCCTGCTTTGGATCATATGCAGCAGAGTGTTGTGATATGGGCAAAACCTTTGTTTGATGCTAATAATGTCAGAGAACTTGTTGATCCTTCTCTTGGCAATTATTATGACCGAGAACAGATGGATCATGTTGTATTGACTGCATCGCTGTGCGTTGAGCAGTCTCCTATCTTACGCCCCCGTATGAGTCAGGTTGTAACACTGCTAAGAGGTGATAAGTCTGTCATGGGATCCAAAAGAGCATCATACCGAAGGAGGCCTTTCCTAAGAACATACTCAGAAGAGCTACTGGATGTGCAAGAATACAACTCTACAAAATATCTGAGAGATCTCGATCGAATGAAGCAGGTTGCCTTGGGTCTTGAGAGCTAA 1461 0.4168 MASDGDSTQASYCLWVNKKSFANKSKKVLTGDSFNRRIGSLFSRSASAQDLRQFDLVKEKEDESSPRGVLESCNRDFDSEHQPPESETSCSRAQSHWGKLPKLWKKRSFKRLPSSLQALPHIGVPRLLKGKSKSTRENHVLNNLYNFRSSLVTFSLSELRNATNNFSNENIIGRGGFAEVFKGRLQDGQLIAVKKLTKGTTEEVISGFLSELGVIAHVDHPNTAKLIGCGVEGGMHLVFELSTLGSLGTLLHSPDKNKLDWSKRYKIALGIADGLLYLHENCHRRIIHRDIKSENILLTENFEPQICDFGLAKWLPEDWTHHNVSKFEGTFGYFAPEYCMHGIVDEKTDVYSFGVLLLEIITGHPALDHMQQSVVIWAKPLFDANNVRELVDPSLGNYYDREQMDHVVLTASLCVEQSPILRPRMSQVVTLLRGDKSVMGSKRASYRRRPFLRTYSEELLDVQEYNSTKYLRDLDRMKQVALGLES* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0671 486 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 42 479 - -
Lan20g0671 486 SMART serkin_6 166 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0671 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Lan20g0671 486 ProSitePatterns Protein kinases ATP-binding region signature. 172 195 IPR017441 GO:0005524
Lan20g0671 486 Gene3D Phosphorylase Kinase; domain 1 128 240 - -
Lan20g0671 486 Gene3D Transferase(Phosphotransferase) domain 1 243 448 - -
Lan20g0671 486 PANTHER OS08G0249100 PROTEIN 42 479 - -
Lan20g0671 486 MobiDBLite consensus disorder prediction 57 85 - -
Lan20g0671 486 MobiDBLite consensus disorder prediction 57 93 - -
Lan20g0671 486 ProSiteProfiles Protein kinase domain profile. 166 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g0671 486 Pfam Protein tyrosine and serine/threonine kinase 169 430 IPR001245 GO:0004672|GO:0006468
Lan20g0671 486 SUPERFAMILY Protein kinase-like (PK-like) 145 432 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0671 Lan-Chr20 5339766 5344431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0671 151 479 Receptor kinase-like Gene Family AT1G53420 41.716 2.29e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lan20g0671 PK_Tyr_Ser-Thr 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0671 - - cam:101512181 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0304 8 5123116 5128125 Lan20g0671 20 5339766 5344431 LSH