Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0665 ATGTGTTGGTCTGAGGGAGAGAGAGACATGGCACTAGAAGCAGTGGTATATCCACAAGCACAAGACCCTTTTGATTATGGAGTAGTCAAAGATTTATATCACCATAACTTTCTCTCTGGTGCTACTAACTGGGGCTATGAACACCTCCTCAACCTTGAAAATGAACAAGAACAACAAAAAGGGTCTATAAGTTTTGTAGAGAACAAAACAGAAGTTAATTATGATCACTTGAAAAATGAGCTTAATTATCTCTCTAATGAACCATCCTCAGAGGCCACTACTCATAACTTAGATAGCTCAACCTCAAATTTTCGTCCTAAGAGGAGAAGAGCCAGAAGCAGAAAGAACAAGGAAGATATTGAGAACCAGAGAATGACTCACATTACTGTTGAGCGTAACAGAAGGAAGCAGATGAATGAGTATCTATCTGTTCTTAAGACTCTAATGCCAGATTCTTATGTCCAAAGGGGTGATCAAGCTTCTATAGTTGGAGGTGCTATTAACTTTGTTAAGGAGCTTGAGCACAGGCTGCAATTCCTTTGTGCTAAAAAACAAACAGAAGGAAAGTCTAATGTAGTTGACGCAAATATGCCATTTTCTGAGTTCTTTACCTTTCCACAGTATTCAACAAGTACCACTATCTGTGATAGTTCTGTGGCCATAGGTGAAGAGAAAGTGGGCAAGGTTCAGTGTTGCATTGCTGATATAGAAGTGACAATGGTTGAAAGCCATGCAAATCTCAAGATAAGATCTAAGAAGAGGCCAAAGCAGCTCTTGAAGATGGTATCTGGTTTGCATAGCATGCGCCTCACAATCTTGCACTTAAATGTTACTACCAGTGGTGAAATTATCCTTTACTCTCTCTGTGTTAAGGTAGAAGATGATTGCAAGTTGGGAACAGTGGATGATATAGCTGCAGCTGTATACCAAATGCTAGATAAGATTCAACAAGAGGCAATGTTGAATTAA 969 0.3932 MCWSEGERDMALEAVVYPQAQDPFDYGVVKDLYHHNFLSGATNWGYEHLLNLENEQEQQKGSISFVENKTEVNYDHLKNELNYLSNEPSSEATTHNLDSSTSNFRPKRRRARSRKNKEDIENQRMTHITVERNRRKQMNEYLSVLKTLMPDSYVQRGDQASIVGGAINFVKELEHRLQFLCAKKQTEGKSNVVDANMPFSEFFTFPQYSTSTTICDSSVAIGEEKVGKVQCCIADIEVTMVESHANLKIRSKKRPKQLLKMVSGLHSMRLTILHLNVTTSGEIILYSLCVKVEDDCKLGTVDDIAAAVYQMLDKIQQEAMLN* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0665 322 Coils Coil 49 69 - -
Lan20g0665 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 185 IPR036638 GO:0046983
Lan20g0665 322 Gene3D - 115 182 IPR036638 GO:0046983
Lan20g0665 322 MobiDBLite consensus disorder prediction 87 101 - -
Lan20g0665 322 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 322 - -
Lan20g0665 322 MobiDBLite consensus disorder prediction 87 119 - -
Lan20g0665 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 173 IPR011598 GO:0046983
Lan20g0665 322 SMART finulus 128 179 IPR011598 GO:0046983
Lan20g0665 322 Pfam Helix-loop-helix DNA-binding domain 123 174 IPR011598 GO:0046983
Lan20g0665 322 PANTHER MAX DIMERIZATION, MAD 10 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0665 Lan-Chr20 5289046 5291374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0665 10 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.013 3.52e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan20g0665 HLH 8.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0665 - - pvu:PHAVU_007G181900g 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0861 4 10504341 10506167 Lan20g0665 20 5289046 5291374 PCT
Lan16g1072 16 17877154 17879440 Lan20g0665 20 5289046 5291374 PCT
Lan20g0665 20 5289046 5291374 Lan4g0861 4 10504341 10506167 PCT
Lan20g0665 20 5289046 5291374 Lan16g1072 16 17877154 17879440 PCT