LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan20g0664	ATGAAGAACATAAATCACTCGAGCTATGAAAGTGGAAGCAGAACCATCATCCTCTGTTTTCTCTTCCTTCTTTTCACACCCCTTAATCTAGCACAGACACAAACCCAAACCACAACAAACAACCAAAACGACAATTATTACAACCGTTTTAGTCCCTCCTTGGCTATTATAATTGTAGTCCTCGTTGCCGCGCTTTTTCTAATGGGATTCTTCTCAATCTACGTTCGTAACTGCGCTGATTCACCTTCCAGCAGTGTCCGTAATAACGGTAACGGAGGACGATCCCGTAGAGGGAACCGTGGCCTCGACCCTTCTGTGATTGAAACATTTCCTACACTTGAATACTCAGCGGTGAAAATGCACAAGATTGGAAAGGGTGCTCTTGAATGCGCTGTTTGTCTTTGCGAATTTGAAGACGCTGAAACGCTGCGTTTGATCCCTGTATGTGACCATGTGTTTCACCCTGAGTGCATAGATGAGTGGTTAGCCTCTCATACTACATGCCCTGTGTGTAGAGCCAACCTCGCTCTTCAACCGGGCGAGCTGGTTCAAGGTATCCCAATTACGATAGGTGAACCGGGAGATATTGAAGCGCAGAACGAACTGGTTCAAACAGCACCGGAACAGCAAGCTGAGGAAAAAAATGAACATCCGGAAGTTGTTTTATTGAACCCAACGCTGAACCGGAATCGGATCAGAGGATCCCGGTCGAGCCGAAAGAATAGATTCCCCCGTTCTCACTCGACCGGGCATTCTCTGATCCAGCCGGGTGAAAACACGGAACGGTTCACCTTAAGACTACCTGTGGAAGTAAGAGAGAAGATATTGCAAAACCCTGAATTGCATAGAGCAAGAAGTATGGTTATGTTGCCAAGAGAAGGTAGTACAAGGCAAGGTTATCGAACCGGAGCTGGTGAGGGAAGTAGTAGAGGAAGATATTCGAGACGGTTGGACCGGGGTTTTAAATCAGACCGGTGGGTTTTCACCATGGCGCCACCGTTCCTAGTTAGGGCGTCATCGATTAGGTCCCCAAGAGTTACTAATAACGCCACTGCAGTCAACTCAGCTGCGCTTCCGCCATTGCCACCGCTGCCACAGCCGGCTGCCGTTGGTTCTGCTCGCTTTCCGGTTTAA	1134	0.4824	MKNINHSSYESGSRTIILCFLFLLFTPLNLAQTQTQTTTNNQNDNYYNRFSPSLAIIIVVLVAALFLMGFFSIYVRNCADSPSSSVRNNGNGGRSRRGNRGLDPSVIETFPTLEYSAVKMHKIGKGALECAVCLCEFEDAETLRLIPVCDHVFHPECIDEWLASHTTCPVCRANLALQPGELVQGIPITIGEPGDIEAQNELVQTAPEQQAEEKNEHPEVVLLNPTLNRNRIRGSRSSRKNRFPRSHSTGHSLIQPGENTERFTLRLPVEVREKILQNPELHRARSMVMLPREGSTRQGYRTGAGEGSSRGRYSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVTNNATAVNSAALPPLPPLPQPAAVGSARFPV*	378

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lan20g0664	377	MobiDBLite	consensus disorder prediction	355	377	-	-
Lan20g0664	377	CDD	RING-H2_EL5_like	129	172	-	-
Lan20g0664	377	PANTHER	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	16	315	-	-
Lan20g0664	377	PANTHER	RING FINGER DOMAIN-CONTAINING	16	315	-	-
Lan20g0664	377	ProSiteProfiles	Zinc finger RING-type profile.	130	172	IPR001841	-
Lan20g0664	377	MobiDBLite	consensus disorder prediction	81	95	-	-
Lan20g0664	377	MobiDBLite	consensus disorder prediction	81	103	-	-
Lan20g0664	377	Pfam	Ring finger domain	129	172	IPR001841	-
Lan20g0664	377	MobiDBLite	consensus disorder prediction	231	257	-	-
Lan20g0664	377	MobiDBLite	consensus disorder prediction	295	316	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan20g0664	Lan-Chr20	5251201	5252780	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan20g0664	1	359	Rapid Response to Elicitors	AT3G05200	44.110	2.12e-92	281

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan20g0664	K10664		-	gmx:100810865	443.351

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lan8g0305	8	5140846	5141919	Lan20g0664	20	5251201	5252780	LSH
Lan20g0664	20	5251201	5252780	Lan4g1265	4	21290942	21292008	LSH
Lan4g0862	4	10515094	10516713	Lan20g0664	20	5251201	5252780	PCT
Lan20g0664	20	5251201	5252780	Lan4g0862	4	10515094	10516713	PCT

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