Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0664 ATGAAGAACATAAATCACTCGAGCTATGAAAGTGGAAGCAGAACCATCATCCTCTGTTTTCTCTTCCTTCTTTTCACACCCCTTAATCTAGCACAGACACAAACCCAAACCACAACAAACAACCAAAACGACAATTATTACAACCGTTTTAGTCCCTCCTTGGCTATTATAATTGTAGTCCTCGTTGCCGCGCTTTTTCTAATGGGATTCTTCTCAATCTACGTTCGTAACTGCGCTGATTCACCTTCCAGCAGTGTCCGTAATAACGGTAACGGAGGACGATCCCGTAGAGGGAACCGTGGCCTCGACCCTTCTGTGATTGAAACATTTCCTACACTTGAATACTCAGCGGTGAAAATGCACAAGATTGGAAAGGGTGCTCTTGAATGCGCTGTTTGTCTTTGCGAATTTGAAGACGCTGAAACGCTGCGTTTGATCCCTGTATGTGACCATGTGTTTCACCCTGAGTGCATAGATGAGTGGTTAGCCTCTCATACTACATGCCCTGTGTGTAGAGCCAACCTCGCTCTTCAACCGGGCGAGCTGGTTCAAGGTATCCCAATTACGATAGGTGAACCGGGAGATATTGAAGCGCAGAACGAACTGGTTCAAACAGCACCGGAACAGCAAGCTGAGGAAAAAAATGAACATCCGGAAGTTGTTTTATTGAACCCAACGCTGAACCGGAATCGGATCAGAGGATCCCGGTCGAGCCGAAAGAATAGATTCCCCCGTTCTCACTCGACCGGGCATTCTCTGATCCAGCCGGGTGAAAACACGGAACGGTTCACCTTAAGACTACCTGTGGAAGTAAGAGAGAAGATATTGCAAAACCCTGAATTGCATAGAGCAAGAAGTATGGTTATGTTGCCAAGAGAAGGTAGTACAAGGCAAGGTTATCGAACCGGAGCTGGTGAGGGAAGTAGTAGAGGAAGATATTCGAGACGGTTGGACCGGGGTTTTAAATCAGACCGGTGGGTTTTCACCATGGCGCCACCGTTCCTAGTTAGGGCGTCATCGATTAGGTCCCCAAGAGTTACTAATAACGCCACTGCAGTCAACTCAGCTGCGCTTCCGCCATTGCCACCGCTGCCACAGCCGGCTGCCGTTGGTTCTGCTCGCTTTCCGGTTTAA 1134 0.4824 MKNINHSSYESGSRTIILCFLFLLFTPLNLAQTQTQTTTNNQNDNYYNRFSPSLAIIIVVLVAALFLMGFFSIYVRNCADSPSSSVRNNGNGGRSRRGNRGLDPSVIETFPTLEYSAVKMHKIGKGALECAVCLCEFEDAETLRLIPVCDHVFHPECIDEWLASHTTCPVCRANLALQPGELVQGIPITIGEPGDIEAQNELVQTAPEQQAEEKNEHPEVVLLNPTLNRNRIRGSRSSRKNRFPRSHSTGHSLIQPGENTERFTLRLPVEVREKILQNPELHRARSMVMLPREGSTRQGYRTGAGEGSSRGRYSRRLDRGFKSDRWVFTMAPPFLVRASSIRSPRVTNNATAVNSAALPPLPPLPQPAAVGSARFPV* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0664 377 MobiDBLite consensus disorder prediction 355 377 - -
Lan20g0664 377 CDD RING-H2_EL5_like 129 172 - -
Lan20g0664 377 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 16 315 - -
Lan20g0664 377 PANTHER RING FINGER DOMAIN-CONTAINING 16 315 - -
Lan20g0664 377 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Lan20g0664 377 MobiDBLite consensus disorder prediction 81 95 - -
Lan20g0664 377 MobiDBLite consensus disorder prediction 81 103 - -
Lan20g0664 377 Pfam Ring finger domain 129 172 IPR001841 -
Lan20g0664 377 MobiDBLite consensus disorder prediction 231 257 - -
Lan20g0664 377 MobiDBLite consensus disorder prediction 295 316 - -
Lan20g0664 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 177 IPR013083 -
Lan20g0664 377 SMART ring_2 130 171 IPR001841 -
Lan20g0664 377 SUPERFAMILY RING/U-box 124 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0664 Lan-Chr20 5251201 5252780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0664 1 359 Rapid Response to Elicitors AT3G05200 44.110 2.12e-92 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0664 K10664 - gmx:100810865 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0305 8 5140846 5141919 Lan20g0664 20 5251201 5252780 LSH
Lan20g0664 20 5251201 5252780 Lan4g1265 4 21290942 21292008 LSH
Lan4g0862 4 10515094 10516713 Lan20g0664 20 5251201 5252780 PCT
Lan20g0664 20 5251201 5252780 Lan4g0862 4 10515094 10516713 PCT