Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0661 ATGTTGATGGACCATCAAGGGCACAACCAGCACCCATCTATGGGGGTTGTTGGTGGTGGAGCACCAATGCCATATGGTTCAAATCCATACCAGCACAACCAGACAACTGGATCACCTGGCTATGGGACCGTTCAATCCACTGGTCAACCAGGTGGAGCTCAGATGGGACAAAATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAACTACTTCAGCAACAGCTCCAAACCTTTTGGGCAAACCAATACCAAGAAATCGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATCAAGAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCCGAGGCACCGGTCATATTTGCAAGGGCATGTGAGATGTTCATATTAGAGTTAACCTTGCGCTCTTGGAATCACACTGAAGAGAACAAAAGGAGAACGCTTCAAAAGAATGACATTGCTGCAGCTATCAATAGAACTGATATCTTCGATTTCTTGGTTGACATTGTGCCTAGAGAGGACTTGAAAGATGAAATTCTTGCATCAATGCCTAGGGGAACAATGCCTGGTGCAGGAGGGCCTGCTGATGGTCTCCCTTATTGCTATATGCCACCGCAACATGCACCCCAAGTTGGGGCTCCCGGTGTCATAATGGGTGAGCCTGTGATGGACCCTAATATGTATGCTCAGCAGTCTCATAATACCTACATGGCACCACAAATGTGGCCACAGCCACCAGAACAACAGCAATCATCTCCTCCGGATCATTAG 783 0.4674 MLMDHQGHNQHPSMGVVGGGAPMPYGSNPYQHNQTTGSPGYGTVQSTGQPGGAQMGQNQLAYQHIHQQQQQLLQQQLQTFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAINRTDIFDFLVDIVPREDLKDEILASMPRGTMPGAGGPADGLPYCYMPPQHAPQVGAPGVIMGEPVMDPNMYAQQSHNTYMAPQMWPQPPEQQQSSPPDH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0661 260 Pfam Core histone H2A/H2B/H3/H4 66 161 IPR007125 GO:0003677
Lan20g0661 260 Gene3D Histone, subunit A 60 176 IPR009072 GO:0046982
Lan20g0661 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 3 257 - -
Lan20g0661 260 SUPERFAMILY Histone-fold 26 170 IPR009072 GO:0046982
Lan20g0661 260 MobiDBLite consensus disorder prediction 1 55 - -
Lan20g0661 260 MobiDBLite consensus disorder prediction 27 55 - -
Lan20g0661 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 3 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0661 Lan-Chr20 5225634 5227978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g0661 3 225 CCAAT-HAP5 Transcription Factor Family AT1G08970 64.286 1.83e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lan20g0661 CBFD_NFYB_HMF 5.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0661 K08066 - zju:107412013 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0307 8 5171351 5173713 Lan20g0661 20 5225634 5227978 LSH
Lan4g0867 4 10544194 10547236 Lan20g0661 20 5225634 5227978 PCT
Lan2g0298 2 2529249 2531279 Lan20g0661 20 5225634 5227978 PCT
Lan16g1070 16 17859176 17862041 Lan20g0661 20 5225634 5227978 PCT
Lan20g0661 20 5225634 5227978 Lan4g0867 4 10544194 10547236 PCT
Lan20g0661 20 5225634 5227978 Lan2g0298 2 2529249 2531279 PCT
Lan20g0661 20 5225634 5227978 Lan16g1070 16 17859176 17862041 PCT